Factsheet for Solyc04g076970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012745	Potato	cytosol	88.48	91.1
Bra019973.1-P	Field mustard	cytosol, plastid	34.57	36.52
CDX93460	Canola	cytosol, plastid	34.57	36.52
CDX94928	Canola	plastid	33.74	35.65
Bra031691.1-P	Field mustard	plastid	32.92	34.63
CDY22613	Canola	cytosol, plastid	32.92	34.48
AT1G09950.1	Thale cress	cytosol	32.51	34.35
KRH52855	Soybean	cytosol	23.05	33.53
Solyc09g005610.2.1	Tomato	cytosol	32.92	33.33
Solyc10g085210.1.1	Tomato	cytosol	31.28	30.89
AT1G58330.1	Thale cress	cytosol	28.4	30.67
Solyc07g062380.1.1	Tomato	nucleus	25.1	26.99
Solyc02g073580.1.1	Tomato	cytosol	24.28	26.94
Solyc02g076640.1.1	Tomato	cytosol	9.47	26.44
Zm00001d040624_P001	Maize	cytosol	23.05	25.0
Solyc12g014300.1.1	Tomato	cytosol	16.46	24.69
Solyc05g056410.1.1	Tomato	cytosol	27.57	24.54
Zm00001d009087_P001	Maize	cytosol	22.63	24.44
Solyc03g006120.2.1	Tomato	cytosol, mitochondrion	19.75	24.12
Solyc02g072570.1.1	Tomato	cytosol	24.69	24.0
KXG32375	Sorghum	cytosol	22.63	23.91
TraesCS2B01G512700.1	Wheat	cytosol	23.05	23.33
Solyc02g073570.1.1	Tomato	nucleus	26.34	22.94
TraesCS2A01G486100.1	Wheat	mitochondrion	23.05	22.49
Os01t0306400-01	Rice	nucleus	23.46	21.76
HORVU2Hr1G108600.1	Barley	cytosol	10.7	20.31

Protein Annotations

EnsemblPlants:Solyc04g076970.2.1	EnsemblPlantsGene:Solyc04g076970.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR025422	InterPro:TGA_domain	ncoils:Coil	PANTHER:PTHR22952	PANTHER:PTHR22952:SF145
PFAM:PF14144	PFscan:PS51806	UniParc:UPI0002766248	UniProt:K4BUD4	MapMan:15.5.4.5	:

Description

No Description!

Coordinates

chr4:+:61924240..61925378

Molecular Weight (calculated)

27714.1 Da

IEP (calculated)

5.434

GRAVY (calculated)

-0.422

Length

243 amino acids

Sequence
(BLAST)

001: MASTSTSQTP SNIISPYYEN WLIQLQYFLE KLNAISSSYG GDDEEENRSN ELVTQVLDHY QDYYREKFNS TNRDVFLLVS PPWYTSLEKT FLWIAGFKPS
101: TLFPTINYSI GSELTTEQCE NLKRLKAETK REEKVIEKGM AKVQEKVAAP PIFELMKRGG TVVDGEASEL ESVIDGMKHS MMSMVETAEH LRGSTVKNIL
201: DILRQKQAVK LLAAVAQFHL QARKLGLQMD IQSAKRINED FIN

Best Arabidopsis Sequence Match ( AT1G09950.1 )
(BLAST)

001: MPNTSSSQSF TIFVDGWLIR HRYFVEQLMC ASSLDETNRI SLEEQQSLVA QFLSHCLQYY QEKFASVSLA GDNVFTFFCP PWFNSYAKLI LWVGDFKPSL
101: VFKLTEVSVA DLTRHQKDRI SSLKSETRRK EREVMRDFAL VQQSVADPPV MLAARRVGAV GMVDGEETDL EEAMEVLKAG MAAAMNNADQ LRCSTVGKVV
201: EILTPPQAIK VLRTIGQLHL RLRDRDQERA

Arabidopsis Description

RAS1At1g09950 [Source:UniProtKB/TrEMBL;Acc:O04515]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.