Factsheet for PGSC0003DMT400012745

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g076970.2.1	Tomato	nucleus	91.1	88.48
Bra019973.1-P	Field mustard	cytosol, plastid	33.9	34.78
CDX93460	Canola	cytosol, plastid	33.9	34.78
KRH52855	Soybean	cytosol	24.58	34.73
CDX94928	Canola	plastid	33.05	33.91
AT1G09950.1	Thale cress	cytosol	33.05	33.91
Bra031691.1-P	Field mustard	plastid	33.05	33.77
CDY22613	Canola	cytosol, plastid	33.05	33.62
PGSC0003DMT400011369	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	33.9	33.33
AT1G58330.1	Thale cress	cytosol	29.24	30.67
PGSC0003DMT400028833	Potato	cytosol	32.2	30.65
PGSC0003DMT400026417	Potato	cytosol	25.85	27.48
PGSC0003DMT400028832	Potato	cytosol	12.29	26.13
PGSC0003DMT400073296	Potato	nucleus	26.69	25.1
PGSC0003DMT400018207	Potato	nucleus	18.22	24.86
PGSC0003DMT400039657	Potato	cytosol	23.31	24.55
Zm00001d040624_P001	Maize	cytosol	23.31	24.55
Zm00001d009087_P001	Maize	cytosol	22.88	24.0
PGSC0003DMT400059950	Potato	cytosol	28.81	23.94
KXG32375	Sorghum	cytosol	23.31	23.91
PGSC0003DMT400073292	Potato	cytosol	25.0	23.6
TraesCS2B01G512700.1	Wheat	cytosol	23.73	23.33
TraesCS2A01G486100.1	Wheat	mitochondrion	23.73	22.49
PGSC0003DMT400073133	Potato	nucleus	25.85	21.79
Os01t0306400-01	Rice	nucleus	23.73	21.37
PGSC0003DMT400068759	Potato	cytosol	20.76	20.94
PGSC0003DMT400088909	Potato	nucleus	21.19	20.49
HORVU2Hr1G108600.1	Barley	cytosol	11.02	20.31

Protein Annotations

EntrezGene:102590800	MapMan:15.5.4.5	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR025422	UniProt:M1A1Q4	PFAM:PF14144	EnsemblPlantsGene:PGSC0003DMG400004967
PGSC:PGSC0003DMG400004967	EnsemblPlants:PGSC0003DMT400012745	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF145	InterPro:TGA_domain
UniParc:UPI000296BFE4	RefSeq:XP_006356862.1	:	:	:	:

Description

Transcription factor HBP-1b [Source:PGSC_GENE;Acc:PGSC0003DMG400004967]

Coordinates

chr4:+:65948902..65950100

Molecular Weight (calculated)

26897.1 Da

IEP (calculated)

6.309

GRAVY (calculated)

-0.539

Length

236 amino acids

Sequence
(BLAST)

001: MASTSTSQTP SNINPYYENW LIQLQNFLEK LNAISSSYGE DEEENKSSEL VTKVLDHYQD YYREKFNSTN RDVFLLVSPP WYTSLEKTFL WIAGFKPSTL
101: FPTINYSIGS ELTTEQEEKL KRLKAETKRE EKVIEKGMAK VQERGAAPPI FELMKRGGTV VDGEATDLES IIDGMKNSMM SMVETAEHLR GSTVRKILDI
201: LQQKQSVKLL AAVAQFHLQA RKLGLQMDIQ SAKKDK

Best Arabidopsis Sequence Match ( AT1G09950.1 )
(BLAST)

001: MPNTSSSQSF TIFVDGWLIR HRYFVEQLMC ASSLDETNRI SLEEQQSLVA QFLSHCLQYY QEKFASVSLA GDNVFTFFCP PWFNSYAKLI LWVGDFKPSL
101: VFKLTEVSVA DLTRHQKDRI SSLKSETRRK EREVMRDFAL VQQSVADPPV MLAARRVGAV GMVDGEETDL EEAMEVLKAG MAAAMNNADQ LRCSTVGKVV
201: EILTPPQAIK VLRTIGQLHL RLRDRDQERA

Arabidopsis Description

RAS1At1g09950 [Source:UniProtKB/TrEMBL;Acc:O04515]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.