Factsheet for PGSC0003DMT400059950

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g056410.1.1	Tomato	cytosol	83.1	86.45
VIT_07s0031g02670.t01	Wine grape	nucleus	48.94	54.51
KRH59621	Soybean	cytosol	47.54	47.37
HORVU3Hr1G018820.1	Barley	extracellular	27.11	43.5
GSMUA_Achr5P28280_001	Banana	cytosol	40.14	42.22
TraesCS3A01G103500.1	Wheat	cytosol	38.03	41.54
TraesCS3D01G105800.1	Wheat	cytosol	37.68	41.15
Os01t0159000-01	Rice	plastid	26.06	40.88
TraesCS3B01G120900.1	Wheat	cytosol	37.32	40.77
KRH58220	Soybean	cytosol	27.46	40.62
Zm00001d039771_P001	Maize	plastid	35.92	37.5
OQU86274	Sorghum	plastid	35.92	36.56
KRH04319	Soybean	cytosol	27.11	36.49
PGSC0003DMT400039657	Potato	cytosol	28.17	35.71
PGSC0003DMT400088909	Potato	nucleus	29.93	34.84
PGSC0003DMT400068759	Potato	cytosol	28.52	34.62
PGSC0003DMT400026417	Potato	cytosol	26.06	33.33
PGSC0003DMT400018207	Potato	nucleus	20.07	32.95
TraesCS2A01G010800.1	Wheat	cytosol	22.18	31.82
PGSC0003DMT400073133	Potato	nucleus	30.63	31.07
PGSC0003DMT400073296	Potato	nucleus	27.11	30.68
PGSC0003DMT400011369	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	25.7	30.42
PGSC0003DMT400073292	Potato	cytosol	26.06	29.6
PGSC0003DMT400028833	Potato	cytosol	25.7	29.44
PGSC0003DMT400012745	Potato	cytosol	23.94	28.81
PGSC0003DMT400028832	Potato	cytosol	8.1	20.72

Protein Annotations

MapMan:15.5.4.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR025422	UniProt:M1C4Y7	PFAM:PF14144	EnsemblPlantsGene:PGSC0003DMG400023327	PGSC:PGSC0003DMG400023327	EnsemblPlants:PGSC0003DMT400059950
PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF268	InterPro:TGA_domain	UniParc:UPI0002967392	SEG:seg

Description

ESTs AU057825(S21823) [Source:PGSC_GENE;Acc:PGSC0003DMG400023327]

Coordinates

chr5:-:51864988..51865842

Molecular Weight (calculated)

32592.7 Da

IEP (calculated)

6.325

GRAVY (calculated)

-0.573

Length

284 amino acids

Sequence
(BLAST)

001: MSTSKNGLEN GKSFHKFFES WLVKQNQDLD QLVRASKDDD NNNKNNNDMM LSSLIHSVVK HYEEYYREKS RYAISDILGM LHPSWLSNLE DAFLWIGGWR
101: PSMAFHLLYS KSGIQLEANL HELIRGFNTK DLGNLSGNQL VLIDELQHKT ISEERKLSEN LAKVQETLAD ASMVELSHVV SELMRDDQLV VNDEEEKIKK
201: NISKKEESLL DLLKKADDLR LSTIKEILRI LTSTQGVHFL IAAAELHLRI HEWGKKKDAA VSHHKWSCQT INDEPNSEGT SVRN

Best Arabidopsis Sequence Match ( AT3G14880.2 )
(BLAST)

001: MSQETAIASF KKFQQSWIEQ LRNHLNHLRS AQNHHRNSAT GDEERLREAV DRVMEHFREY HRAKWAATDK DVIEVMASPW ASALERSLQW VGGWRPTTLF
101: HLVYTESSIL FESRIVDILR GFRTGDLSDL SPSQFRTVSE LQCETVKEEN AITEELSEWQ DDASDLVMGT SSDPDQRIRR LAEIVHRTDD LRLRTITRVV
201: EVLSPLQQAE FLVAAAELRT GVAGWGTSHD RRRSSEV

Arabidopsis Description

DNA-binding protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LKB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.