CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039771_P001	Maize	plastid	80.29	82.35
HORVU3Hr1G018820.1	Barley	extracellular	45.16	71.19
TraesCS3D01G105800.1	Wheat	cytosol	63.08	67.69
TraesCS3B01G120900.1	Wheat	cytosol	61.65	66.15
Os01t0159000-01	Rice	plastid	41.94	64.64
TraesCS2A01G010800.1	Wheat	cytosol	34.05	47.98
GSMUA_Achr5P28280_001	Banana	cytosol	45.88	47.41
VIT_07s0031g02670.t01	Wine grape	nucleus	36.92	40.39
Solyc05g056410.1.1	Tomato	cytosol	37.99	38.83
KRH59621	Soybean	cytosol	37.63	36.84
PGSC0003DMT400059950	Potato	cytosol	36.56	35.92
KRH04319	Soybean	cytosol	23.66	31.28
KRH58220	Soybean	cytosol	21.51	31.25
EES19938	Sorghum	cytosol, mitochondrion	24.73	29.87
KXG32375	Sorghum	cytosol	23.66	28.7
OQU87585	Sorghum	cytosol	27.6	25.0

Protein Annotations

MapMan:15.5.4.5	UniProt:A0A1W0VVY6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR025422	EnsemblPlants:OQU86274	ProteinID:OQU86274	ProteinID:OQU86274.1	PFAM:PF14144
PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF130	EnsemblPlantsGene:SORBI_3003G062200	InterPro:TGA_domain	UniParc:UPI0009DC903D
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:5434604..5435933

Molecular Weight (calculated)

29961.5 Da

IEP (calculated)

4.915

GRAVY (calculated)

-0.284

Length

279 amino acids

Sequence
(BLAST)

001: MPATFPPPPP PPPPSHNLPP LLSSNESFSK FFESWIGEQS RDLEELRAAA SAEPAAPEAD LRRLVDQVMG HYAQYYSTKA AAAAGDVSMM FTPSWTSTTE
101: NLYLWCGGWR PTAAIQLLYT KCGMQLEHRL PVFLDGGGLN KDDLSDLSVA QLRAADQLQH RTISREREIE EVAATAQEAL TSKTMVELAG GGGGGGGGMD
201: AGAMDREMQT KAEGMRQVLE MADGLRLETM REVVALLRPA QAVHFLLAAA ELHLAVHDFG RRKDGHAGNA AAAAAAPPE

Best Arabidopsis Sequence Match ( AT3G14880.2 )
(BLAST)

001: MSQETAIASF KKFQQSWIEQ LRNHLNHLRS AQNHHRNSAT GDEERLREAV DRVMEHFREY HRAKWAATDK DVIEVMASPW ASALERSLQW VGGWRPTTLF
101: HLVYTESSIL FESRIVDILR GFRTGDLSDL SPSQFRTVSE LQCETVKEEN AITEELSEWQ DDASDLVMGT SSDPDQRIRR LAEIVHRTDD LRLRTITRVV
201: EVLSPLQQAE FLVAAAELRT GVAGWGTSHD RRRSSEV

Arabidopsis Description

DNA-binding protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LKB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.