CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038990_P001	Maize	cytosol, mitochondrion	95.24	94.83
Os05t0560200-00	Rice	mitochondrion	77.49	80.27
TraesCS1D01G400300.1	Wheat	mitochondrion	76.19	77.88
TraesCS1B01G420300.1	Wheat	mitochondrion	76.19	77.88
TraesCS1A01G392200.1	Wheat	mitochondrion	75.76	77.43
HORVU1Hr1G086580.1	Barley	mitochondrion	74.46	75.44
GSMUA_Achr1P11520_001	Banana	cytosol	49.35	50.44
VIT_19s0014g01450.t01	Wine grape	cytosol, mitochondrion, peroxisome	38.1	38.77
VIT_19s0014g01210.t01	Wine grape	cytosol	35.5	35.5
Solyc07g062380.1.1	Tomato	nucleus	33.77	34.51
PGSC0003DMT400018207	Potato	nucleus	25.54	34.1
AT3G14880.1	Thale cress	nucleus	35.5	33.61
Bra027297.1-P	Field mustard	nucleus	33.33	32.49
CDX97614	Canola	nucleus	33.33	32.49
CDY70896	Canola	nucleus	32.9	32.07
CDX98510	Canola	nucleus	32.9	32.07
PGSC0003DMT400039657	Potato	cytosol	29.44	30.36
Solyc12g014300.1.1	Tomato	cytosol	20.78	29.63
KRH21958	Soybean	cytosol	32.47	27.99
KXG32375	Sorghum	cytosol	25.97	26.09
OQU86274	Sorghum	plastid	29.87	24.73
OQU87585	Sorghum	cytosol	29.0	21.75

Protein Annotations

MapMan:15.5.4.5	EntrezGene:8074585	UniProt:C5YVH9	EnsemblPlants:EES19938	ProteinID:EES19938	ProteinID:EES19938.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009987	GO:GO:0043565
GO:GO:0080167	InterPro:IPR025422	PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF268
EnsemblPlantsGene:SORBI_3009G230000	InterPro:TGA_domain	UniParc:UPI0001A89263	RefSeq:XP_002441508.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:-:57045814..57047188

Molecular Weight (calculated)

25059.9 Da

IEP (calculated)

6.040

GRAVY (calculated)

-0.043

Length

231 amino acids

Sequence
(BLAST)

001: MELELEAATR RFHLWFRGLR SLRRDLASAR WSDDAAAQLP ALVGRFVAHL ESYCAARAGL DPVWTLSAPW ATPAERGAAY WLAGWRPTTL VHLLYTESGR
101: RLEAQLPDLL LGVRSGNLGD LTPAQLAQVD DLQRRTVAEE DALAREMALV QEGHGVVAAP SADGSGLLDV AGLVRTARAV LDRADALRLR TVKRAVEILE
201: PAQAAELLVA AADLEIGFRE FGLKHGSGRD G

Best Arabidopsis Sequence Match ( AT3G14880.2 )
(BLAST)

001: MSQETAIASF KKFQQSWIEQ LRNHLNHLRS AQNHHRNSAT GDEERLREAV DRVMEHFREY HRAKWAATDK DVIEVMASPW ASALERSLQW VGGWRPTTLF
101: HLVYTESSIL FESRIVDILR GFRTGDLSDL SPSQFRTVSE LQCETVKEEN AITEELSEWQ DDASDLVMGT SSDPDQRIRR LAEIVHRTDD LRLRTITRVV
201: EVLSPLQQAE FLVAAAELRT GVAGWGTSHD RRRSSEV

Arabidopsis Description

DNA-binding protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LKB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.