Factsheet for VIT_19s0014g01450.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g062380.1.1	Tomato	nucleus	62.11	62.39
VIT_19s0014g01210.t01	Wine grape	cytosol	62.11	61.04
PGSC0003DMT400018207	Potato	nucleus	44.93	58.96
PGSC0003DMT400039657	Potato	cytosol	53.74	54.46
Solyc12g014300.1.1	Tomato	cytosol	38.77	54.32
Bra027297.1-P	Field mustard	nucleus	50.22	48.1
CDX97614	Canola	nucleus	50.22	48.1
CDY70896	Canola	nucleus	49.78	47.68
CDX98510	Canola	nucleus	49.78	47.68
AT3G14880.1	Thale cress	nucleus	48.46	45.08
GSMUA_Achr1P11520_001	Banana	cytosol	44.05	44.25
KRH21958	Soybean	cytosol	50.66	42.91
TraesCS1B01G420300.1	Wheat	mitochondrion	41.85	42.04
TraesCS1A01G392200.1	Wheat	mitochondrion	41.41	41.59
TraesCS1D01G400300.1	Wheat	mitochondrion	41.41	41.59
HORVU1Hr1G086580.1	Barley	mitochondrion	40.97	40.79
Os05t0560200-00	Rice	mitochondrion	38.33	39.01
EES19938	Sorghum	cytosol, mitochondrion	38.77	38.1
VIT_07s0031g02670.t01	Wine grape	nucleus	42.73	38.04
Zm00001d038990_P001	Maize	cytosol, mitochondrion	38.77	37.93
VIT_19s0014g01220.t01	Wine grape	nucleus	26.87	24.8

Protein Annotations

EntrezGene:100245234	wikigene:100245234	MapMan:15.5.4.5	EMBL:AM466940	ProteinID:CAN72574	ProteinID:CAN72574.1
ProteinID:CCB46260	ProteinID:CCB46260.1	UniProt:F6H2P2	EMBL:FN595229	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR025422	EntrezGene:LOC100245234	wikigene:LOC100245234
PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF195	InterPro:TGA_domain	UniParc:UPI000198584F
ArrayExpress:VIT_19s0014g01450	EnsemblPlantsGene:VIT_19s0014g01450	EnsemblPlants:VIT_19s0014g01450.t01	RefSeq:XP_002283108	RefSeq:XP_002283108.1	:

Description

No Description!

Coordinates

chr19:-:1520508..1521347

Molecular Weight (calculated)

25680.5 Da

IEP (calculated)

6.119

GRAVY (calculated)

-0.203

Length

227 amino acids

Sequence
(BLAST)

001: MSFHRFYASW FDHLNHLVHQ LTLAPKPTTP QDNPALLQLV QKVISHYSQY YRAKSVAAQN DAVSLFAAPW SSSLERSLHW VAGWRPTIVF HLIYTETSAR
101: FESHIADILH GVRTGDLGDL STAQLHRVSE LQCETVREEN EITRELAKWQ EGAVELVEAG GDGNVEEKIG GLMSVLVKAD ELRMRTIWRV AEMLTPQQAV
201: EFLIAAAELQ FGVRVLGLNH DNQRENV

Best Arabidopsis Sequence Match ( AT3G14880.2 )
(BLAST)

001: MSQETAIASF KKFQQSWIEQ LRNHLNHLRS AQNHHRNSAT GDEERLREAV DRVMEHFREY HRAKWAATDK DVIEVMASPW ASALERSLQW VGGWRPTTLF
101: HLVYTESSIL FESRIVDILR GFRTGDLSDL SPSQFRTVSE LQCETVKEEN AITEELSEWQ DDASDLVMGT SSDPDQRIRR LAEIVHRTDD LRLRTITRVV
201: EVLSPLQQAE FLVAAAELRT GVAGWGTSHD RRRSSEV

Arabidopsis Description

DNA-binding protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LKB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.