Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400073133 | Potato | nucleus | 45.12 | 39.64 |
| Solyc02g073570.1.1 | Tomato | nucleus | 44.72 | 39.43 |
| Bra013338.1-P | Field mustard | cytosol | 39.43 | 38.49 |
| Solyc03g006120.2.1 | Tomato | cytosol, mitochondrion | 30.89 | 38.19 |
| Solyc02g072570.1.1 | Tomato | cytosol | 38.21 | 37.6 |
| PGSC0003DMT400073292 | Potato | cytosol | 36.99 | 36.4 |
| PGSC0003DMT400073296 | Potato | nucleus | 36.18 | 35.46 |
| CDY52216 | Canola | cytosol | 39.84 | 35.0 |
| TraesCS3D01G295800.1 | Wheat | cytosol | 41.46 | 34.93 |
| AT4G18680.1 | Thale cress | cytosol | 33.33 | 34.89 |
| Bra017589.1-P | Field mustard | cytosol | 39.43 | 34.64 |
| TraesCS3A01G306200.1 | Wheat | cytosol | 41.46 | 34.46 |
| CDY23102 | Canola | nucleus | 39.02 | 34.29 |
| PGSC0003DMT400088909 | Potato | nucleus | 33.74 | 34.02 |
| Bra025050.1-P | Field mustard | nucleus | 38.62 | 33.93 |
| TraesCS3B01G330400.1 | Wheat | cytosol | 40.65 | 33.9 |
| CDY70293 | Canola | cytosol | 34.15 | 33.87 |
| Bra012582.1-P | Field mustard | cytosol | 34.15 | 33.87 |
| CDX78883 | Canola | cytosol, nucleus, plastid | 17.07 | 33.6 |
| CDY58051 | Canola | nucleus | 38.21 | 33.57 |
| CDY61468 | Canola | cytosol | 38.21 | 33.57 |
| Zm00001d043390_P001 | Maize | cytosol | 40.24 | 33.33 |
| PGSC0003DMT400068759 | Potato | cytosol | 31.71 | 33.33 |
| CDX76507 | Canola | nucleus | 32.11 | 33.05 |
| GSMUA_Achr4P08070_001 | Banana | cytosol | 30.49 | 33.04 |
| CDY66844 | Canola | cytosol | 38.21 | 32.98 |
| VIT_07s0031g02670.t01 | Wine grape | nucleus | 34.15 | 32.94 |
| OQU87585 | Sorghum | cytosol | 41.06 | 32.79 |
| Bra020997.1-P | Field mustard | nucleus | 36.99 | 31.71 |
| AT4G18690.1 | Thale cress | cytosol | 36.18 | 31.56 |
| AT5G45830.1 | Thale cress | nucleus | 40.24 | 30.65 |
| CDX99444 | Canola | cytosol, nucleus, plastid | 16.26 | 30.53 |
| CDY34053 | Canola | cytosol | 36.99 | 27.91 |
| VIT_19s0014g01450.t01 | Wine grape | cytosol, mitochondrion, peroxisome | 24.8 | 26.87 |
| VIT_19s0014g01210.t01 | Wine grape | cytosol | 23.98 | 25.54 |
Protein Annotations
| EntrezGene:100854046 | wikigene:100854046 | MapMan:15.5.4.5 | ProteinID:CCB46244 | ProteinID:CCB46244.1 | UniProt:F6H2M6 |
| EMBL:FN595229 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:IPR025422 | EntrezGene:LOC100854046 | wikigene:LOC100854046 | PFAM:PF14144 | PFscan:PS51806 | PANTHER:PTHR22952 |
| PANTHER:PTHR22952:SF210 | InterPro:TGA_domain | UniParc:UPI000198588C | ArrayExpress:VIT_19s0014g01220 | EnsemblPlantsGene:VIT_19s0014g01220 | EnsemblPlants:VIT_19s0014g01220.t01 |
| RefSeq:XP_003634633 | RefSeq:XP_003634633.1 | : | : | : | : |
Description
No Description!
Coordinates
chr19:-:1343943..1345043
Molecular Weight (calculated)
27775.0 Da
IEP (calculated)
6.431
GRAVY (calculated)
-0.307
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSHRLFH CCFQDWINQQ HQDLQELLQV LDTDSPDSDH LRHLIQKSLQ HFQDYSATRA ELSKLDAPSF FCPSWITSFE NSFLWLGGCR PSLAIRLLYS
101: ISGSELQAQL PDFLKGCTRG NLADISATQL ISINALHGWI VREEDRLSSR MASMQEDTAD EPLAIIAKKL RTVGEYSRTV NSAIETHSQA LARVLEEADK
201: LRLSTFKGLQ EILTPLQGAH FLVASKKLHL SMHEWGKQRA EQVGDT
101: ISGSELQAQL PDFLKGCTRG NLADISATQL ISINALHGWI VREEDRLSSR MASMQEDTAD EPLAIIAKKL RTVGEYSRTV NSAIETHSQA LARVLEEADK
201: LRLSTFKGLQ EILTPLQGAH FLVASKKLHL SMHEWGKQRA EQVGDT
001: MGSSSKNIEQ AQDSYLEWMS LQSQRIPELK QLLAQRRSHG DEDNDNKLRK LTGKIIGDFK NYAAKRADLA HRCSSNYYAP TWNSPLENAL IWMGGCRPSS
101: FFRLVYALCG SQTEIRVTQF LRNIDGYESS GGGGGASLSD LSAEQLAKIN VLHVKIIDEE EKMTKKVSSL QEDAADIPIA TVAYEMENVG EPNVVVDQAL
201: DKQEEAMARL LVEADNLRVD TLAKILGILS PVQGADFLLA GKKLHLSMHE WGTMRDRRRR DCMVDTEGNA GGEEGK
101: FFRLVYALCG SQTEIRVTQF LRNIDGYESS GGGGGASLSD LSAEQLAKIN VLHVKIIDEE EKMTKKVSSL QEDAADIPIA TVAYEMENVG EPNVVVDQAL
201: DKQEEAMARL LVEADNLRVD TLAKILGILS PVQGADFLLA GKKLHLSMHE WGTMRDRRRR DCMVDTEGNA GGEEGK
Arabidopsis Description
DOG1delay of germination 1 [Source:TAIR;Acc:AT5G45830]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.