CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012582.1-P	Field mustard	cytosol	100.0	100.0
CDY66844	Canola	cytosol	97.98	85.26
AT4G18690.1	Thale cress	cytosol	73.79	64.89
AT4G18680.1	Thale cress	cytosol	61.29	64.68
CDX76507	Canola	nucleus	62.1	64.44
CDY34053	Canola	cytosol	73.39	55.83
CDY61468	Canola	cytosol	48.39	42.86
CDY58051	Canola	nucleus	48.39	42.86
CDY52216	Canola	cytosol	47.58	42.14
CDY23102	Canola	nucleus	46.77	41.43
Solyc03g006120.2.1	Tomato	cytosol, mitochondrion	32.66	40.7
PGSC0003DMT400088909	Potato	nucleus	35.48	36.07
PGSC0003DMT400068759	Potato	cytosol	33.06	35.04
VIT_19s0014g01220.t01	Wine grape	nucleus	33.87	34.15
CDX78883	Canola	cytosol, nucleus, plastid	16.94	33.6
Solyc02g072570.1.1	Tomato	cytosol	33.06	32.8
PGSC0003DMT400073292	Potato	cytosol	31.85	31.6
CDX99444	Canola	cytosol, nucleus, plastid	16.53	31.3
PGSC0003DMT400073296	Potato	nucleus	31.45	31.08
Solyc02g073570.1.1	Tomato	nucleus	32.66	29.03
PGSC0003DMT400073133	Potato	nucleus	32.66	28.93
Zm00001d043390_P001	Maize	cytosol	32.26	26.94
OQU87585	Sorghum	cytosol	31.85	25.65
GSMUA_Achr4P08070_001	Banana	cytosol	22.98	25.11
TraesCS3A01G306200.1	Wheat	cytosol	28.63	23.99
TraesCS3B01G330400.1	Wheat	cytosol	28.23	23.73
TraesCS3D01G295800.1	Wheat	cytosol	27.82	23.63
CDX93460	Canola	cytosol, plastid	21.77	23.48
CDY22613	Canola	cytosol, plastid	21.37	22.84
CDX97614	Canola	nucleus	21.77	22.78
CDX94928	Canola	plastid	20.97	22.61
CDY70896	Canola	nucleus	21.37	22.36
CDX98510	Canola	nucleus	21.37	22.36
CDX78882	Canola	cytosol	19.76	20.5
CDX99446	Canola	cytosol	19.76	20.5

Protein Annotations

MapMan:15.5.4.5	GO:A0A078JRW9	UniProt:A0A078JRW9	EnsemblPlants:CDY70293	ProteinID:CDY70293	ProteinID:CDY70293.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSBRNA2T00097892001	InterPro:IPR025422	PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF210
InterPro:TGA_domain	UniParc:UPI0002540A95	:	:	:	:

Description

BnaCnng67640DBnaCnng67640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JRW9]

Coordinates

chrLK041706:+:43..794

Molecular Weight (calculated)

27349.3 Da

IEP (calculated)

5.215

GRAVY (calculated)

-0.352

Length

248 amino acids

Sequence
(BLAST)

001: MSQRSNAYDH HKLEELVGRI VNDFQKYADK RSELADRSCS CYFAPSWNSS LENGLLWMGG CRPSSFMRII YALCGSHAET QLSQYLLKMD GEVVDGHDGD
101: SSMSELNATQ LAKINDLHVE VIAKEDKLSK LSANMQEDVA DMPIAVTAFS SDSVEADVAV EDALDKHEEG MAVLIADADK LRLETLKKIV EVLTPVQAAE
201: FLLSGKRLHV SLHEWGRVRE ERRFGCARAE DAAPARGGAG KSKRSATC

Best Arabidopsis Sequence Match ( AT4G18690.1 )
(BLAST)

001: MATSSSSYGI EQLQKGCYYE WMSVQAKHIV DLKEALMSHR SKEDHKLEEL VGKIVNDFQK YTEKRSELSR RSCSSYFAPS WNSPLENGLL WMGGCRPSSF
101: IRVIYSLCGS QAETQLSQYL LKIDENVEVN HGGSMSDLNA SQLAKINDLH IKVIEKEDKI TKKSANLQEN VADMPIAIAA YATDLMNGDV VVEDALDKYE
201: EGMAVLMVEA DKLRFETLRK IVDVVTPVQA AEFLLAGKRL HISLHEWGRV REEQRFGCVR TDAAAATGGA GTEKSKRSSL LM

Arabidopsis Description

DOGL3Protein DOG1-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q58FV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.