Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70293 | Canola | cytosol | 64.68 | 61.29 |
| Bra012582.1-P | Field mustard | cytosol | 64.68 | 61.29 |
| AT4G18690.1 | Thale cress | cytosol | 72.34 | 60.28 |
| CDX76507 | Canola | nucleus | 57.87 | 56.9 |
| CDY66844 | Canola | cytosol | 68.94 | 56.84 |
| Bra020997.1-P | Field mustard | nucleus | 66.81 | 54.7 |
| CDY34053 | Canola | cytosol | 65.53 | 47.24 |
| Solyc03g006120.2.1 | Tomato | cytosol, mitochondrion | 32.77 | 38.69 |
| PGSC0003DMT400088909 | Potato | nucleus | 37.02 | 35.66 |
| AT5G45830.1 | Thale cress | nucleus | 48.94 | 35.6 |
| PGSC0003DMT400068759 | Potato | cytosol | 34.47 | 34.62 |
| VIT_19s0014g01220.t01 | Wine grape | nucleus | 34.89 | 33.33 |
| Solyc02g072570.1.1 | Tomato | cytosol | 34.47 | 32.4 |
| PGSC0003DMT400073296 | Potato | nucleus | 34.04 | 31.87 |
| PGSC0003DMT400073292 | Potato | cytosol | 33.62 | 31.6 |
| PGSC0003DMT400073133 | Potato | nucleus | 34.04 | 28.57 |
| Solyc02g073570.1.1 | Tomato | nucleus | 33.62 | 28.32 |
| Zm00001d043390_P001 | Maize | cytosol | 35.74 | 28.28 |
| OQU87585 | Sorghum | cytosol | 36.17 | 27.6 |
| TraesCS3D01G295800.1 | Wheat | cytosol | 32.77 | 26.37 |
| TraesCS3A01G306200.1 | Wheat | cytosol | 33.19 | 26.35 |
| TraesCS3B01G330400.1 | Wheat | cytosol | 32.77 | 26.1 |
| GSMUA_Achr4P08070_001 | Banana | cytosol | 25.11 | 25.99 |
| AT4G18650.1 | Thale cress | cytosol | 22.13 | 22.41 |
| AT1G58330.1 | Thale cress | cytosol | 21.28 | 22.22 |
| AT1G09950.1 | Thale cress | cytosol | 21.28 | 21.74 |
| AT3G14880.1 | Thale cress | nucleus | 21.7 | 20.9 |
Protein Annotations
| MapMan:15.5.4.5 | ArrayExpress:AT4G18680 | EnsemblPlantsGene:AT4G18680 | RefSeq:AT4G18680 | TAIR:AT4G18680 | RefSeq:AT4G18680-TAIR-G |
| EnsemblPlants:AT4G18680.1 | TAIR:AT4G18680.1 | Unigene:At.54397 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR025422 | PFAM:PF14144 | PFscan:PS51806 |
| PANTHER:PTHR22952 | PANTHER:PTHR22952:SF210 | InterPro:TGA_domain | UniParc:UPI00000A76A8 | SEG:seg | : |
Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18690.1); Has 361 Blast hits to 361 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 353; Viruses - 0; Other Eukaryotes - 0 (sou /.../CBI BLink). [Source:TAIR;Acc:AT4G18680]
Coordinates
chr4:+:10281033..10281740
Molecular Weight (calculated)
26153.3 Da
IEP (calculated)
5.001
GRAVY (calculated)
-0.204
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLQTKHIDD LKEALMCQRN NDDKLEDLVG KIVNDYHTYA GKRSELSYRC CAHYFAPSWN TPIENSMLWM GGCRPSSFIR LIYALCGSQA ETQLSQYLLK
101: IDDDFDINHG GFMSDLTATQ LGKLNDLHLE VIKKEDKITK TSANFQDDVA DLPIADVVHA DVAVEDALDK HEEGMAVLLA EADKLRFETL RKIVDVVTPL
201: QAVEFLLAGK RLQLSLHDRG RVRADVCGGV GGAAV
101: IDDDFDINHG GFMSDLTATQ LGKLNDLHLE VIKKEDKITK TSANFQDDVA DLPIADVVHA DVAVEDALDK HEEGMAVLLA EADKLRFETL RKIVDVVTPL
201: QAVEFLLAGK RLQLSLHDRG RVRADVCGGV GGAAV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.