Factsheet for Solyc03g006120.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068759	Potato	cytosol	90.95	77.35
PGSC0003DMT400088909	Potato	nucleus	90.45	73.77
Solyc02g072570.1.1	Tomato	cytosol	52.76	42.0
Solyc02g073570.1.1	Tomato	nucleus	46.73	33.33
Solyc02g076640.1.1	Tomato	cytosol	14.57	33.33
AT4G18680.1	Thale cress	cytosol	38.69	32.77
Bra012582.1-P	Field mustard	cytosol	40.7	32.66
CDY70293	Canola	cytosol	40.7	32.66
VIT_19s0014g01220.t01	Wine grape	nucleus	38.19	30.89
Bra013338.1-P	Field mustard	cytosol	37.69	29.76
CDY66844	Canola	cytosol	40.7	28.42
AT4G18690.1	Thale cress	cytosol	39.7	28.01
Bra020997.1-P	Field mustard	nucleus	40.2	27.87
CDX76507	Canola	nucleus	32.66	27.2
CDY23102	Canola	nucleus	38.19	27.14
CDY52216	Canola	cytosol	37.69	26.79
Bra017589.1-P	Field mustard	cytosol	37.69	26.79
Bra025050.1-P	Field mustard	nucleus	37.19	26.43
CDX78883	Canola	cytosol, nucleus, plastid	16.58	26.4
CDX99444	Canola	cytosol, nucleus, plastid	17.09	25.95
Zm00001d043390_P001	Maize	cytosol	38.69	25.93
CDY61468	Canola	cytosol	36.18	25.71
CDY58051	Canola	nucleus	36.18	25.71
CDY34053	Canola	cytosol	41.21	25.15
AT5G45830.1	Thale cress	nucleus	40.2	24.77
Solyc05g056410.1.1	Tomato	cytosol	33.67	24.54
Solyc07g062380.1.1	Tomato	nucleus	27.64	24.34
GSMUA_Achr4P08070_001	Banana	cytosol	27.64	24.23
Solyc12g014300.1.1	Tomato	cytosol	19.6	24.07
Solyc09g005610.2.1	Tomato	cytosol	28.64	23.75
OQU87585	Sorghum	cytosol	36.68	23.7
TraesCS3A01G306200.1	Wheat	cytosol	34.67	23.31
TraesCS3D01G295800.1	Wheat	cytosol	34.17	23.29
TraesCS3B01G330400.1	Wheat	cytosol	34.17	23.05
Solyc02g073580.1.1	Tomato	cytosol	25.13	22.83
Solyc10g085210.1.1	Tomato	cytosol	25.63	20.73
Solyc04g076970.2.1	Tomato	nucleus	24.12	19.75

Protein Annotations

MapMan:15.5.4.5	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR025422	UniProt:K4BE35	PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF210	EnsemblPlantsGene:Solyc03g006120.2	EnsemblPlants:Solyc03g006120.2.1	InterPro:TGA_domain	UniParc:UPI00027677D9	:

Description

No Description!

Coordinates

chr3:-:778294..780637

Molecular Weight (calculated)

22914.5 Da

IEP (calculated)

6.133

GRAVY (calculated)

-0.430

Length

199 amino acids

Sequence
(BLAST)

001: MVNNFQGYAN GRSRLARVDV SPFFAPTWCT PLENSVLWIG GCRPSTFIRL IYALCGIEIQ SHTARYLQGM KIGEFGHLSG EQITMIDKLQ RQIILEERRF
101: SSRLASLQED VVDQPFAMAA RIYDTERDEN EIEPLNKHGE DMSNLLEEVD ELRMKTLKEI LGILTPIQGV EYLAATKRIR LCLQQWGKKR EQEHNSNNN

Best Arabidopsis Sequence Match ( AT4G18690.1 )
(BLAST)

001: MATSSSSYGI EQLQKGCYYE WMSVQAKHIV DLKEALMSHR SKEDHKLEEL VGKIVNDFQK YTEKRSELSR RSCSSYFAPS WNSPLENGLL WMGGCRPSSF
101: IRVIYSLCGS QAETQLSQYL LKIDENVEVN HGGSMSDLNA SQLAKINDLH IKVIEKEDKI TKKSANLQEN VADMPIAIAA YATDLMNGDV VVEDALDKYE
201: EGMAVLMVEA DKLRFETLRK IVDVVTPVQA AEFLLAGKRL HISLHEWGRV REEQRFGCVR TDAAAATGGA GTEKSKRSSL LM

Arabidopsis Description

DOGL3Protein DOG1-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q58FV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.