CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78883	Canola	cytosol, nucleus, plastid	84.73	88.8
Bra013338.1-P	Field mustard	cytosol	66.41	34.52
CDY58051	Canola	nucleus	57.25	26.79
CDY61468	Canola	cytosol	57.25	26.79
CDY23102	Canola	nucleus	55.73	26.07
CDY52216	Canola	cytosol	54.96	25.71
CDX76507	Canola	nucleus	43.51	23.85
CDY66844	Canola	cytosol	43.51	20.0
CDY34053	Canola	cytosol	47.33	19.02
Solyc02g072570.1.1	Tomato	cytosol	35.88	18.8
PGSC0003DMT400073296	Potato	nucleus	35.88	18.73
PGSC0003DMT400073292	Potato	cytosol	35.11	18.4
Solyc03g006120.2.1	Tomato	cytosol, mitochondrion	25.95	17.09
PGSC0003DMT400088909	Potato	nucleus	31.3	16.8
CDY70293	Canola	cytosol	31.3	16.53
GSMUA_Achr4P08070_001	Banana	cytosol	28.24	16.3
VIT_19s0014g01220.t01	Wine grape	nucleus	30.53	16.26
PGSC0003DMT400068759	Potato	cytosol	28.24	15.81
Solyc02g073570.1.1	Tomato	nucleus	32.82	15.41
PGSC0003DMT400073133	Potato	nucleus	32.82	15.36
Zm00001d043390_P001	Maize	cytosol	29.01	12.79
OQU87585	Sorghum	cytosol	29.77	12.66
TraesCS3D01G295800.1	Wheat	cytosol	25.95	11.64
TraesCS3A01G306200.1	Wheat	cytosol	25.95	11.49
TraesCS3B01G330400.1	Wheat	cytosol	25.19	11.19
CDX97614	Canola	nucleus	19.08	10.55
CDY70896	Canola	nucleus	18.32	10.13
CDX98510	Canola	nucleus	18.32	10.13
CDX99446	Canola	cytosol	17.56	9.62
CDX78882	Canola	cytosol	17.56	9.62
CDX93460	Canola	cytosol, plastid	16.79	9.57
CDX94928	Canola	plastid	16.79	9.57
CDY22613	Canola	cytosol, plastid	15.27	8.62

Protein Annotations

MapMan:35.1	GO:A0A078EF46	EnsemblPlants:CDX99444	ProteinID:CDX99444	ProteinID:CDX99444.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00107781001	InterPro:IPR025422
PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF210	InterPro:TGA_domain	UniParc:UPI0004EB3AB1
SEG:seg	:	:	:	:	:

Description

BnaC01g11080D

Coordinates

chrLK031910:-:698766..699271

Molecular Weight (calculated)

14844.3 Da

IEP (calculated)

4.938

GRAVY (calculated)

-0.656

Length

131 amino acids

Sequence
(BLAST)

001: MENPSSSNIE EVQQECYDEW MSLQAKRMTD LKRALANGEK NDGALRELIQ SVIEDFKDYA RKRSEHSRRY SSNYFAPTWN TCLENALLWM GGCRPSSFIR
101: LVYAMCGSQP SSVLPTSSVT TTSAIGESDR D

Best Arabidopsis Sequence Match ( AT4G18690.1 )
(BLAST)

001: MATSSSSYGI EQLQKGCYYE WMSVQAKHIV DLKEALMSHR SKEDHKLEEL VGKIVNDFQK YTEKRSELSR RSCSSYFAPS WNSPLENGLL WMGGCRPSSF
101: IRVIYSLCGS QAETQLSQYL LKIDENVEVN HGGSMSDLNA SQLAKINDLH IKVIEKEDKI TKKSANLQEN VADMPIAIAA YATDLMNGDV VVEDALDKYE
201: EGMAVLMVEA DKLRFETLRK IVDVVTPVQA AEFLLAGKRL HISLHEWGRV REEQRFGCVR TDAAAATGGA GTEKSKRSSL LM

Arabidopsis Description

DOGL3Protein DOG1-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q58FV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.