CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99444	Canola	cytosol, nucleus, plastid	88.8	84.73
Bra013338.1-P	Field mustard	cytosol	73.6	36.51
CDY58051	Canola	nucleus	61.6	27.5
CDY61468	Canola	cytosol	61.6	27.5
CDY23102	Canola	nucleus	59.2	26.43
CDY52216	Canola	cytosol	59.2	26.43
CDX76507	Canola	nucleus	44.8	23.43
CDY66844	Canola	cytosol	46.4	20.35
PGSC0003DMT400073296	Potato	nucleus	40.0	19.92
CDY34053	Canola	cytosol	50.4	19.33
Solyc02g072570.1.1	Tomato	cytosol	36.0	18.0
PGSC0003DMT400073292	Potato	cytosol	36.0	18.0
PGSC0003DMT400088909	Potato	nucleus	33.6	17.21
VIT_19s0014g01220.t01	Wine grape	nucleus	33.6	17.07
CDY70293	Canola	cytosol	33.6	16.94
GSMUA_Achr4P08070_001	Banana	cytosol	30.4	16.74
Solyc03g006120.2.1	Tomato	cytosol, mitochondrion	26.4	16.58
PGSC0003DMT400068759	Potato	cytosol	30.4	16.24
Solyc02g073570.1.1	Tomato	nucleus	36.0	16.13
PGSC0003DMT400073133	Potato	nucleus	36.0	16.07
Zm00001d043390_P001	Maize	cytosol	30.4	12.79
OQU87585	Sorghum	cytosol	31.2	12.66
TraesCS3D01G295800.1	Wheat	cytosol	28.0	11.99
TraesCS3A01G306200.1	Wheat	cytosol	28.0	11.82
TraesCS3B01G330400.1	Wheat	cytosol	27.2	11.53
CDX97614	Canola	nucleus	20.8	10.97
CDY70896	Canola	nucleus	20.0	10.55
CDX98510	Canola	nucleus	20.0	10.55
CDX99446	Canola	cytosol	18.4	9.62
CDX78882	Canola	cytosol	18.4	9.62
CDX93460	Canola	cytosol, plastid	17.6	9.57
CDX94928	Canola	plastid	17.6	9.57
CDY22613	Canola	cytosol, plastid	16.0	8.62

Protein Annotations

MapMan:35.1	GO:A0A078CUM8	EnsemblPlants:CDX78883	ProteinID:CDX78883	ProteinID:CDX78883.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00131361001	InterPro:IPR025422
PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF210	InterPro:TGA_domain	UniParc:UPI0004EF2AE5

Description

BnaA01g09500D

Coordinates

chrLK031816:+:614222..615665

Molecular Weight (calculated)

14634.2 Da

IEP (calculated)

5.247

GRAVY (calculated)

-0.718

Length

125 amino acids

Sequence
(BLAST)

001: MENPSSSNIE EVQQECYDEW MSLQAKRMTD LKRALANGEK NDGALRELIQ SVIEDFKDYA RKRSEHSRRY SSNYFAPTWN TCLENALLWM GGCRPSSFIR
101: LVYAMCGSQT ELRLTNFFRD NIGDW

Best Arabidopsis Sequence Match ( AT5G45830.2 )
(BLAST)

001: MGSSSKNIEQ AQDSYLEWMS LQSQRIPELK QLLAQRRSHG DEDNDNKLRK LTGKIIGDFK NYAAKRADLA HRCSSNYYAP TWNSPLENAL IWMGGCRPSS
101: FFRLVYALCG SQTEIRVTQF LRNIDGYESS GGGGGASLSD LSAEQLAKIN VLHVKIIDEE EKMTKKVSSL QEDAADIPIA TVAYEMENVG EPNVVVDQAL
201: DKQEEAMARL LVEADNLRVD TLAKILGILS PVQGADFLLA GKKLHLSMHE WGTMRDRRRR DCMVDTEGNA GGEEGK

Arabidopsis Description

DOG1delay of germination 1 [Source:TAIR;Acc:AT5G45830]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.