CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019973.1-P	Field mustard	cytosol, plastid	95.65	95.65
CDX93460	Canola	cytosol, plastid	95.65	95.65
CDY22613	Canola	cytosol, plastid	85.22	84.48
AT1G09950.1	Thale cress	cytosol	79.57	79.57
KRH52855	Soybean	cytosol	26.52	36.53
Solyc04g076970.2.1	Tomato	nucleus	35.65	33.74
PGSC0003DMT400012745	Potato	cytosol	33.91	33.05
Zm00001d040624_P001	Maize	cytosol	29.13	29.91
Zm00001d009087_P001	Maize	cytosol	28.26	28.89
KXG32375	Sorghum	cytosol	28.7	28.7
TraesCS2B01G512700.1	Wheat	cytosol	27.83	26.67
TraesCS2A01G486100.1	Wheat	mitochondrion	28.26	26.1
Os01t0306400-01	Rice	nucleus	29.57	25.95
CDX99446	Canola	cytosol	26.09	25.1
CDX78882	Canola	cytosol	26.09	25.1
HORVU2Hr1G108600.1	Barley	cytosol	13.04	23.44
CDX76507	Canola	nucleus	22.61	21.76
CDY70293	Canola	cytosol	22.61	20.97
CDY70896	Canola	nucleus	21.3	20.68
CDX98510	Canola	nucleus	21.3	20.68
CDX97614	Canola	nucleus	20.87	20.25
CDY66844	Canola	cytosol	23.91	19.3
CDY52216	Canola	cytosol	23.48	19.29
CDY23102	Canola	nucleus	23.48	19.29
CDY61468	Canola	cytosol	22.61	18.57
CDY58051	Canola	nucleus	22.17	18.21
CDX78883	Canola	cytosol, nucleus, plastid	9.57	17.6
CDY34053	Canola	cytosol	23.91	16.87
CDX99444	Canola	cytosol, nucleus, plastid	9.57	16.79

Protein Annotations

MapMan:15.5.4.5	GO:A0A078E696	EnsemblPlants:CDX94928	ProteinID:CDX94928	ProteinID:CDX94928.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00100408001	InterPro:IPR025422
PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF145	InterPro:TGA_domain	UniParc:UPI0004EDE9AA
SEG:seg	:	:	:	:	:

Description

BnaC05g07430D

Coordinates

chrLK031886:+:232267..233082

Molecular Weight (calculated)

26320.3 Da

IEP (calculated)

6.674

GRAVY (calculated)

-0.311

Length

230 amino acids

Sequence
(BLAST)

001: MPVTSSSQSF SSFVNGWLIR HRYFVEQLTC ASSFDETNQE QQQSLVTQFL SHCLQYYQEK SSAVSLAGDN IFTFFCPPWF TPYARLILWV GDFKPSLVFK
101: LTDSTVDDLT RHQRDRLSSL RSETRRRERD VMRDFALVQQ SVADPPVMLA ARRVGARGMV DGEESDLEEA MDVLRRGMAR AMNSADELRC STVGKVVEIL
201: TSSQAVKVLR TIGELHFRLR ELVGLERDHQ

Best Arabidopsis Sequence Match ( AT1G09950.1 )
(BLAST)

001: MPNTSSSQSF TIFVDGWLIR HRYFVEQLMC ASSLDETNRI SLEEQQSLVA QFLSHCLQYY QEKFASVSLA GDNVFTFFCP PWFNSYAKLI LWVGDFKPSL
101: VFKLTEVSVA DLTRHQKDRI SSLKSETRRK EREVMRDFAL VQQSVADPPV MLAARRVGAV GMVDGEETDL EEAMEVLKAG MAAAMNNADQ LRCSTVGKVV
201: EILTPPQAIK VLRTIGQLHL RLRDRDQERA

Arabidopsis Description

RAS1At1g09950 [Source:UniProtKB/TrEMBL;Acc:O04515]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.