CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58051	Canola	nucleus	95.71	95.71
CDY52216	Canola	cytosol	87.86	87.86
CDY23102	Canola	nucleus	87.14	87.14
AT5G45830.1	Thale cress	nucleus	75.71	65.63
CDX78883	Canola	cytosol, nucleus, plastid	27.5	61.6
CDX99444	Canola	cytosol, nucleus, plastid	26.79	57.25
CDX76507	Canola	nucleus	42.86	50.21
CDY70293	Canola	cytosol	42.86	48.39
CDY66844	Canola	cytosol	47.86	47.02
CDY34053	Canola	cytosol	47.14	40.49
VIT_19s0014g01220.t01	Wine grape	nucleus	33.57	38.21
Solyc02g072570.1.1	Tomato	cytosol	33.93	38.0
PGSC0003DMT400073292	Potato	cytosol	32.5	36.4
Solyc03g006120.2.1	Tomato	cytosol, mitochondrion	25.71	36.18
PGSC0003DMT400073296	Potato	nucleus	32.14	35.86
PGSC0003DMT400088909	Potato	nucleus	29.64	34.02
Solyc02g073570.1.1	Tomato	nucleus	33.57	33.69
PGSC0003DMT400073133	Potato	nucleus	32.86	32.86
PGSC0003DMT400068759	Potato	cytosol	26.79	32.05
GSMUA_Achr4P08070_001	Banana	cytosol	24.29	29.96
OQU87585	Sorghum	cytosol	32.14	29.22
Zm00001d043390_P001	Maize	cytosol	30.71	28.96
CDX97614	Canola	nucleus	24.29	28.69
CDY70896	Canola	nucleus	23.57	27.85
CDX98510	Canola	nucleus	23.57	27.85
TraesCS3D01G295800.1	Wheat	cytosol	27.86	26.71
TraesCS3A01G306200.1	Wheat	cytosol	28.21	26.69
TraesCS3B01G330400.1	Wheat	cytosol	27.86	26.44
CDX78882	Canola	cytosol	21.07	24.69
CDX99446	Canola	cytosol	20.71	24.27
CDX93460	Canola	cytosol, plastid	18.93	23.04
CDX94928	Canola	plastid	18.57	22.61
CDY22613	Canola	cytosol, plastid	17.14	20.69

Protein Annotations

MapMan:15.5.4.5	GO:A0A078J946	UniProt:A0A078J946	ProteinID:AJE25536.1	EnsemblPlants:CDY61468	ProteinID:CDY61468
ProteinID:CDY61468.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00033878001	InterPro:IPR025422	PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF210	InterPro:TGA_domain	UniParc:UPI0004EB5D61	:	:	:

Description

BnaCnng37860DBnaCnng37860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J946]

Coordinates

chrLK033999:+:23641..24788

Molecular Weight (calculated)

31153.0 Da

IEP (calculated)

5.451

GRAVY (calculated)

-0.427

Length

280 amino acids

Sequence
(BLAST)

001: MEDKGKNIEQ AQQSCYLGWM SLQSQRVLDL KQALAQRRSH EGTADAATDE KKLRELTQKI IGDFKDYARK RADLSHRCSS NYYAPSWNTP LENALIWMGG
101: CRPSSFFRLV YALCGSQTEI RVTQFLRNVD GYDTSGSGGA SLSDLTAEQL AKINVLHVKI IDEEEKMTKK VSSLQEDAAD IPISTVAYAE EHVGEPNLAV
201: DQALDKQEEA MATLLAEADN LRVYTLSKII EVLAPMQAAD FLLAGIKLHL SMHSWGALRD RRRRECIIEA ADDAGGKEGK

Best Arabidopsis Sequence Match ( AT5G45830.5 )
(BLAST)

001: MKTKTHKTQT RKPKEIKPII KILLIISEKK KKMGSSSKNI EQAQDSYLEW MSLQSQRIPE LKQLLAQRRS HGDEDNDNKL RKLTGKIIGD FKNYAAKRAD
101: LAHRCSSNYY APTWNSPLEN ALIWMGGCRP SSFFRLVYAL CGSQTEIRVT QFLRNIDGYE SSGGGGGASL SDLSAEQLAK INVLHVKIID EEEKMTKKVS
201: SLQEDAADIP IATVAYEMEN VGEPNVVVDQ ALDKQEEAMA RLLVEADNLR VDTLAKILGI LSPVQGADFL LAGKKLHLSM HEWGTMRDRR RRDCMVDTEG
301: NAGGEEGK

Arabidopsis Description

DOG1delay of germination 1 [Source:TAIR;Acc:AT5G45830]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.