CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52216	Canola	cytosol	96.07	96.07
CDY61468	Canola	cytosol	87.14	87.14
CDY58051	Canola	nucleus	87.14	87.14
AT5G45830.1	Thale cress	nucleus	76.07	65.94
CDX78883	Canola	cytosol, nucleus, plastid	26.43	59.2
CDX99444	Canola	cytosol, nucleus, plastid	26.07	55.73
CDX76507	Canola	nucleus	42.14	49.37
CDY70293	Canola	cytosol	41.43	46.77
CDY66844	Canola	cytosol	46.43	45.61
CDY34053	Canola	cytosol	46.07	39.57
VIT_19s0014g01220.t01	Wine grape	nucleus	34.29	39.02
Solyc02g072570.1.1	Tomato	cytosol	34.64	38.8
Solyc03g006120.2.1	Tomato	cytosol, mitochondrion	27.14	38.19
PGSC0003DMT400073292	Potato	cytosol	33.57	37.6
PGSC0003DMT400088909	Potato	nucleus	31.43	36.07
PGSC0003DMT400073296	Potato	nucleus	32.14	35.86
Solyc02g073570.1.1	Tomato	nucleus	33.93	34.05
PGSC0003DMT400073133	Potato	nucleus	33.93	33.93
PGSC0003DMT400068759	Potato	cytosol	28.21	33.76
Zm00001d043390_P001	Maize	cytosol	32.5	30.64
OQU87585	Sorghum	cytosol	33.57	30.52
GSMUA_Achr4P08070_001	Banana	cytosol	23.93	29.52
TraesCS3A01G306200.1	Wheat	cytosol	31.07	29.39
TraesCS3B01G330400.1	Wheat	cytosol	30.71	29.15
TraesCS3D01G295800.1	Wheat	cytosol	30.36	29.11
CDX97614	Canola	nucleus	22.5	26.58
CDY70896	Canola	nucleus	22.14	26.16
CDX98510	Canola	nucleus	22.14	26.16
CDX93460	Canola	cytosol, plastid	19.29	23.48
CDX94928	Canola	plastid	19.29	23.48
CDX78882	Canola	cytosol	18.93	22.18
CDX99446	Canola	cytosol	18.93	22.18
CDY22613	Canola	cytosol, plastid	17.86	21.55

Protein Annotations

MapMan:15.5.4.5	GO:A0A078GDK7	UniProt:A0A078GDK7	EnsemblPlants:CDY23102	ProteinID:CDY23102	ProteinID:CDY23102.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSBRNA2T00021584001	InterPro:IPR025422	PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF210
InterPro:TGA_domain	UniParc:UPI0004EF4C14	SEG:seg	:	:	:

Description

BnaC09g18560DBnaC09g18560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDK7]

Coordinates

chrLK032140:+:37746..39330

Molecular Weight (calculated)

31272.8 Da

IEP (calculated)

4.673

GRAVY (calculated)

-0.531

Length

280 amino acids

Sequence
(BLAST)

001: MENKGKNIEQ AQESCYQQWM SLQSQRVPEL KQALPQRRTH EGTADAAADD NKLRELTQNI IGDFKNYAGK RADLSHRCSS NYYAPSWNTP LENALLWMGG
101: CRPSSFFRLV YALCGSQTEI LVTQFLRNID GYDYSGSGGA SLSDLTAEQL AEINVLHVKI IDEEEKMTKK VSSLQEDAAD IPISTVAYAE EHVGEPNAMV
201: DQALDKQEEA MATLLAEADN LRVDTLTKII EILTPVQAGD FFMAGKKLHL SMHQWGALRD RRRRECIIDA GNDAGGEEEK

Best Arabidopsis Sequence Match ( AT5G45830.2 )
(BLAST)

001: MGSSSKNIEQ AQDSYLEWMS LQSQRIPELK QLLAQRRSHG DEDNDNKLRK LTGKIIGDFK NYAAKRADLA HRCSSNYYAP TWNSPLENAL IWMGGCRPSS
101: FFRLVYALCG SQTEIRVTQF LRNIDGYESS GGGGGASLSD LSAEQLAKIN VLHVKIIDEE EKMTKKVSSL QEDAADIPIA TVAYEMENVG EPNVVVDQAL
201: DKQEEAMARL LVEADNLRVD TLAKILGILS PVQGADFLLA GKKLHLSMHE WGTMRDRRRR DCMVDTEGNA GGEEGK

Arabidopsis Description

DOG1delay of germination 1 [Source:TAIR;Acc:AT5G45830]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.