CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019973.1-P	Field mustard	cytosol, plastid	99.13	99.13
CDX94928	Canola	plastid	95.65	95.65
CDY22613	Canola	cytosol, plastid	88.26	87.5
AT1G09950.1	Thale cress	cytosol	82.61	82.61
KRH52855	Soybean	cytosol	27.83	38.32
Solyc04g076970.2.1	Tomato	nucleus	36.52	34.57
PGSC0003DMT400012745	Potato	cytosol	34.78	33.9
Zm00001d040624_P001	Maize	cytosol	29.57	30.36
KXG32375	Sorghum	cytosol	29.57	29.57
Zm00001d009087_P001	Maize	cytosol	28.26	28.89
TraesCS2B01G512700.1	Wheat	cytosol	28.26	27.08
TraesCS2A01G486100.1	Wheat	mitochondrion	28.7	26.51
Os01t0306400-01	Rice	nucleus	30.0	26.34
CDX78882	Canola	cytosol	26.96	25.94
CDX99446	Canola	cytosol	26.09	25.1
HORVU2Hr1G108600.1	Barley	cytosol	13.04	23.44
CDX76507	Canola	nucleus	23.48	22.59
CDY70293	Canola	cytosol	23.48	21.77
CDY70896	Canola	nucleus	21.74	21.1
CDX98510	Canola	nucleus	21.74	21.1
CDX97614	Canola	nucleus	21.3	20.68
CDY66844	Canola	cytosol	24.78	20.0
CDY52216	Canola	cytosol	23.48	19.29
CDY23102	Canola	nucleus	23.48	19.29
CDY61468	Canola	cytosol	23.04	18.93
CDY58051	Canola	nucleus	22.17	18.21
CDX78883	Canola	cytosol, nucleus, plastid	9.57	17.6
CDY34053	Canola	cytosol	24.78	17.48
CDX99444	Canola	cytosol, nucleus, plastid	9.57	16.79

Protein Annotations

MapMan:15.5.4.5	GO:A0A078DVS4	EnsemblPlants:CDX93460	ProteinID:CDX93460	ProteinID:CDX93460.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00156129001	InterPro:IPR025422
PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF145	InterPro:TGA_domain	UniParc:UPI0004EE8B7D
SEG:seg	:	:	:	:	:

Description

BnaA06g05880D

Coordinates

chrLK031876:+:300756..301448

Molecular Weight (calculated)

26247.3 Da

IEP (calculated)

6.788

GRAVY (calculated)

-0.297

Length

230 amino acids

Sequence
(BLAST)

001: MPVTSSSQSF SSFVNGWLIR HRYFVEQLTC ASSLDETNEE QQQSLVTQFL SHCLQYYQEK SSAVSLAGDN VFTFFCPPWF TSYARLILWV GDFKPSLVFK
101: LTDSTVDDLT RHQRDRISSL RSETRRRERD VMRDFALVQQ SVADPPVMLA ARRVGARGMV DGEESDLEEA MEVLKRGMAR AMNSADELRC STVGKVVEIL
201: TPSQAVKVLR TIGELHLRLR ELVGLERHHQ

Best Arabidopsis Sequence Match ( AT1G09950.1 )
(BLAST)

001: MPNTSSSQSF TIFVDGWLIR HRYFVEQLMC ASSLDETNRI SLEEQQSLVA QFLSHCLQYY QEKFASVSLA GDNVFTFFCP PWFNSYAKLI LWVGDFKPSL
101: VFKLTEVSVA DLTRHQKDRI SSLKSETRRK EREVMRDFAL VQQSVADPPV MLAARRVGAV GMVDGEETDL EEAMEVLKAG MAAAMNNADQ LRCSTVGKVV
201: EILTPPQAIK VLRTIGQLHL RLRDRDQERA

Arabidopsis Description

RAS1At1g09950 [Source:UniProtKB/TrEMBL;Acc:O04515]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.