Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025050.1-P | Field mustard | nucleus | 97.86 | 97.86 |
| CDY61468 | Canola | cytosol | 95.71 | 95.71 |
| CDY52216 | Canola | cytosol | 88.57 | 88.57 |
| CDY23102 | Canola | nucleus | 87.14 | 87.14 |
| AT5G45830.1 | Thale cress | nucleus | 77.14 | 66.87 |
| CDX78883 | Canola | cytosol, nucleus, plastid | 27.5 | 61.6 |
| CDX99444 | Canola | cytosol, nucleus, plastid | 26.79 | 57.25 |
| CDX76507 | Canola | nucleus | 44.29 | 51.88 |
| CDY70293 | Canola | cytosol | 42.86 | 48.39 |
| CDY66844 | Canola | cytosol | 48.21 | 47.37 |
| CDY34053 | Canola | cytosol | 48.93 | 42.02 |
| VIT_19s0014g01220.t01 | Wine grape | nucleus | 33.57 | 38.21 |
| Solyc02g072570.1.1 | Tomato | cytosol | 33.57 | 37.6 |
| Solyc03g006120.2.1 | Tomato | cytosol, mitochondrion | 25.71 | 36.18 |
| PGSC0003DMT400073292 | Potato | cytosol | 32.14 | 36.0 |
| PGSC0003DMT400073296 | Potato | nucleus | 31.79 | 35.46 |
| PGSC0003DMT400088909 | Potato | nucleus | 30.36 | 34.84 |
| Solyc02g073570.1.1 | Tomato | nucleus | 33.57 | 33.69 |
| PGSC0003DMT400068759 | Potato | cytosol | 27.5 | 32.91 |
| PGSC0003DMT400073133 | Potato | nucleus | 32.86 | 32.86 |
| GSMUA_Achr4P08070_001 | Banana | cytosol | 24.29 | 29.96 |
| OQU87585 | Sorghum | cytosol | 32.14 | 29.22 |
| Zm00001d043390_P001 | Maize | cytosol | 30.71 | 28.96 |
| CDX97614 | Canola | nucleus | 23.57 | 27.85 |
| CDY70896 | Canola | nucleus | 22.86 | 27.0 |
| CDX98510 | Canola | nucleus | 22.86 | 27.0 |
| TraesCS3D01G295800.1 | Wheat | cytosol | 27.86 | 26.71 |
| TraesCS3A01G306200.1 | Wheat | cytosol | 28.21 | 26.69 |
| TraesCS3B01G330400.1 | Wheat | cytosol | 27.86 | 26.44 |
| CDX78882 | Canola | cytosol | 20.36 | 23.85 |
| CDX99446 | Canola | cytosol | 20.0 | 23.43 |
| CDX93460 | Canola | cytosol, plastid | 18.21 | 22.17 |
| CDX94928 | Canola | plastid | 18.21 | 22.17 |
| CDY22613 | Canola | cytosol, plastid | 16.43 | 19.83 |
Protein Annotations
| MapMan:15.5.4.5 | GO:A0A078J5B1 | UniProt:A0A078J5B1 | EnsemblPlants:CDY58051 | ProteinID:CDY58051 | ProteinID:CDY58051.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00023037001 |
| InterPro:IPR025422 | PFAM:PF14144 | PFscan:PS51806 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF210 | InterPro:TGA_domain |
| UniParc:UPI0004EE9EA7 | SEG:seg | : | : | : | : |
Description
BnaA06g40200DBnaA06g40200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J5B1]
Coordinates
chrLK033631:-:1322..2465
Molecular Weight (calculated)
31007.8 Da
IEP (calculated)
5.988
GRAVY (calculated)
-0.429
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDKGKNIEQ AQQSCYLGWM SLQSQRVLDL KQALAQRRSH EGTADAAAND KKLRELTQKI IGDFKDYARK RADLSHRCSS SYYAPSWNSP LENALIWMGG
101: CRPSSFFRLV YALCGSQTEI RVTQFLRNID GYDASGSGGA SLSDLTAEQL AKINVLHVKI IDEEEKMTKK VSSLQEDAAD IPISTVAYAE EHVGEPNLAV
201: DQALDKQEEA MATLLAEGDN LRVYTLSKII EVLAPMQAAD FLLAGKKLHL SMHAWGALRD RRRRECVIDA ADDAGGKEGK
101: CRPSSFFRLV YALCGSQTEI RVTQFLRNID GYDASGSGGA SLSDLTAEQL AKINVLHVKI IDEEEKMTKK VSSLQEDAAD IPISTVAYAE EHVGEPNLAV
201: DQALDKQEEA MATLLAEGDN LRVYTLSKII EVLAPMQAAD FLLAGKKLHL SMHAWGALRD RRRRECVIDA ADDAGGKEGK
001: MGSSSKNIEQ AQDSYLEWMS LQSQRIPELK QLLAQRRSHG DEDNDNKLRK LTGKIIGDFK NYAAKRADLA HRCSSNYYAP TWNSPLENAL IWMGGCRPSS
101: FFRLVYALCG SQTEIRVTQF LRNIDGYESS GGGGGASLSD LSAEQLAKIN VLHVKIIDEE EKMTKKVSSL QEDAADIPIA TVAYEMENVG EPNVVVDQAL
201: DKQEEAMARL LVEADNLRVD TLAKILGILS PVQGADFLLA GKKLHLSMHE WGTMRDRRRR DCMVDTEGNA GGEEGK
101: FFRLVYALCG SQTEIRVTQF LRNIDGYESS GGGGGASLSD LSAEQLAKIN VLHVKIIDEE EKMTKKVSSL QEDAADIPIA TVAYEMENVG EPNVVVDQAL
201: DKQEEAMARL LVEADNLRVD TLAKILGILS PVQGADFLLA GKKLHLSMHE WGTMRDRRRR DCMVDTEGNA GGEEGK
Arabidopsis Description
DOG1delay of germination 1 [Source:TAIR;Acc:AT5G45830]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.