CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031691.1-P	Field mustard	plastid	94.83	95.24
CDX93460	Canola	cytosol, plastid	87.5	88.26
CDX94928	Canola	plastid	84.48	85.22
AT1G09950.1	Thale cress	cytosol	79.31	80.0
KRH52855	Soybean	cytosol	27.16	37.72
PGSC0003DMT400012745	Potato	cytosol	33.62	33.05
Solyc04g076970.2.1	Tomato	nucleus	34.48	32.92
Zm00001d040624_P001	Maize	cytosol	27.59	28.57
KXG32375	Sorghum	cytosol	27.59	27.83
Zm00001d009087_P001	Maize	cytosol	26.72	27.56
TraesCS2B01G512700.1	Wheat	cytosol	25.86	25.0
Os01t0306400-01	Rice	nucleus	28.02	24.81
TraesCS2A01G486100.1	Wheat	mitochondrion	26.29	24.5
CDX78882	Canola	cytosol	24.57	23.85
CDX99446	Canola	cytosol	23.71	23.01
HORVU2Hr1G108600.1	Barley	cytosol	12.5	22.66
CDY70293	Canola	cytosol	22.84	21.37
CDX76507	Canola	nucleus	21.98	21.34
CDY70896	Canola	nucleus	20.69	20.25
CDX98510	Canola	nucleus	20.69	20.25
CDX97614	Canola	nucleus	20.26	19.83
CDY66844	Canola	cytosol	24.14	19.65
CDY52216	Canola	cytosol	21.55	17.86
CDY23102	Canola	nucleus	21.55	17.86
CDY61468	Canola	cytosol	20.69	17.14
CDY34053	Canola	cytosol	23.28	16.56
CDY58051	Canola	nucleus	19.83	16.43
CDX78883	Canola	cytosol, nucleus, plastid	8.62	16.0
CDX99444	Canola	cytosol, nucleus, plastid	8.62	15.27

Protein Annotations

MapMan:15.5.4.5	GO:A0A078GDA8	UniProt:A0A078GDA8	EnsemblPlants:CDY22613	ProteinID:CDY22613	ProteinID:CDY22613.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00019278001
InterPro:IPR025422	PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF145	InterPro:TGA_domain
UniParc:UPI0004EB49A3	SEG:seg	:	:	:	:

Description

BnaC08g42470DBnaC08g42470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDA8]

Coordinates

chrLK032134:+:100196..100937

Molecular Weight (calculated)

26080.1 Da

IEP (calculated)

5.363

GRAVY (calculated)

-0.166

Length

232 amino acids

Sequence
(BLAST)

001: MPVTTSSQSF TSFANGWLIR HRHFVEQLAC ASSLDETNRI TLQDQQFLVT QFLSHCLQYY QEKSSAVSVA GDNVFTFFSP PWFTSSYARL ILWVGDFKPS
101: LVFKLTDSSV DDLTRHQRDR ISTLRAETRR KERDVMRDFA LVQQSVADPP VMLAARGVGA RGMVDGEESD LEEAMEVLKN GMAAAMNDAD ELRCATVGRV
201: VEILTTSQAV KVLRTIGELH LRLRELVGLE SE

Best Arabidopsis Sequence Match ( AT1G09950.1 )
(BLAST)

001: MPNTSSSQSF TIFVDGWLIR HRYFVEQLMC ASSLDETNRI SLEEQQSLVA QFLSHCLQYY QEKFASVSLA GDNVFTFFCP PWFNSYAKLI LWVGDFKPSL
101: VFKLTEVSVA DLTRHQKDRI SSLKSETRRK EREVMRDFAL VQQSVADPPV MLAARRVGAV GMVDGEETDL EEAMEVLKAG MAAAMNNADQ LRCSTVGKVV
201: EILTPPQAIK VLRTIGQLHL RLRDRDQERA

Arabidopsis Description

RAS1At1g09950 [Source:UniProtKB/TrEMBL;Acc:O04515]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.