CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98510	Canola	nucleus	100.0	100.0
CDX97614	Canola	nucleus	97.05	97.05
AT3G14880.1	Thale cress	nucleus	85.23	82.79
VIT_19s0014g01210.t01	Wine grape	cytosol	48.52	49.78
VIT_19s0014g01450.t01	Wine grape	cytosol, mitochondrion, peroxisome	47.68	49.78
Solyc07g062380.1.1	Tomato	nucleus	46.84	49.12
PGSC0003DMT400018207	Potato	nucleus	34.6	47.4
KRH21958	Soybean	cytosol	52.32	46.27
PGSC0003DMT400039657	Potato	cytosol	41.77	44.2
Solyc12g014300.1.1	Tomato	cytosol	28.69	41.98
Os05t0560200-00	Rice	mitochondrion	32.91	34.98
GSMUA_Achr1P11520_001	Banana	cytosol	33.33	34.96
TraesCS1D01G400300.1	Wheat	mitochondrion	32.91	34.51
TraesCS1B01G420300.1	Wheat	mitochondrion	32.91	34.51
TraesCS1A01G392200.1	Wheat	mitochondrion	32.91	34.51
HORVU1Hr1G086580.1	Barley	mitochondrion	32.91	34.21
Zm00001d038990_P001	Maize	cytosol, mitochondrion	32.91	33.62
EES19938	Sorghum	cytosol, mitochondrion	32.07	32.9
CDX78882	Canola	cytosol	25.74	25.52
CDX99446	Canola	cytosol	25.32	25.1
CDY61468	Canola	cytosol	27.85	23.57
CDY58051	Canola	nucleus	27.0	22.86
CDY52216	Canola	cytosol	26.58	22.5
CDY23102	Canola	nucleus	26.16	22.14
CDX93460	Canola	cytosol, plastid	21.1	21.74
CDY70293	Canola	cytosol	22.36	21.37
CDX94928	Canola	plastid	20.68	21.3
CDY66844	Canola	cytosol	24.89	20.7
CDY22613	Canola	cytosol, plastid	20.25	20.69
CDX76507	Canola	nucleus	20.68	20.5
CDX78883	Canola	cytosol, nucleus, plastid	10.55	20.0
CDX99444	Canola	cytosol, nucleus, plastid	10.13	18.32
CDY34053	Canola	cytosol	24.47	17.79

Protein Annotations

MapMan:15.5.4.5	GO:A0A078JZB3	UniProt:A0A078JZB3	EnsemblPlants:CDY70896	ProteinID:CDY70896	ProteinID:CDY70896.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00008352001
InterPro:IPR025422	PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF195	InterPro:TGA_domain
UniParc:UPI0004EED523	:	:	:	:	:

Description

BnaCnng70220DBnaC05g38650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JZB3]

Coordinates

chrLK043683:+:1558..2742

Molecular Weight (calculated)

27297.2 Da

IEP (calculated)

6.289

GRAVY (calculated)

-0.497

Length

237 amino acids

Sequence
(BLAST)

001: MSRETAIESF KKFQHTWVEQ LQHHLNHLRS VQNHHRNSAT GDEERLREAV ERVMELCREY HRAKLATTEK DVVGLMAAPW SSALERSLHW VGDWRPTTLF
101: HLVYTESSIL FESRIVDILR GFRTGDLSDL SPSQFRTVSE LQCETVKEEN AITEDLSEWQ DDASELVMGT VSNLDQRIRR LAEIVHRADD LRLRTITGVV
201: ELLSPLQQAE FLIAAAELRR GVSGWGSSHD RRRSANV

Best Arabidopsis Sequence Match ( AT3G14880.2 )
(BLAST)

001: MSQETAIASF KKFQQSWIEQ LRNHLNHLRS AQNHHRNSAT GDEERLREAV DRVMEHFREY HRAKWAATDK DVIEVMASPW ASALERSLQW VGGWRPTTLF
101: HLVYTESSIL FESRIVDILR GFRTGDLSDL SPSQFRTVSE LQCETVKEEN AITEELSEWQ DDASDLVMGT SSDPDQRIRR LAEIVHRTDD LRLRTITRVV
201: EVLSPLQQAE FLVAAAELRT GVAGWGTSHD RRRSSEV

Arabidopsis Description

DNA-binding protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LKB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.