Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97614 | Canola | nucleus | 83.61 | 86.08 |
| Bra027297.1-P | Field mustard | nucleus | 83.61 | 86.08 |
| CDY70896 | Canola | nucleus | 82.79 | 85.23 |
| CDX98510 | Canola | nucleus | 82.79 | 85.23 |
| VIT_19s0014g01210.t01 | Wine grape | cytosol | 46.72 | 49.35 |
| VIT_19s0014g01450.t01 | Wine grape | cytosol, mitochondrion, peroxisome | 45.08 | 48.46 |
| Solyc07g062380.1.1 | Tomato | nucleus | 44.26 | 47.79 |
| PGSC0003DMT400018207 | Potato | nucleus | 33.61 | 47.4 |
| KRH21958 | Soybean | cytosol | 50.41 | 45.9 |
| PGSC0003DMT400039657 | Potato | cytosol | 39.75 | 43.3 |
| Solyc12g014300.1.1 | Tomato | cytosol | 28.69 | 43.21 |
| Os05t0560200-00 | Rice | mitochondrion | 34.02 | 37.22 |
| TraesCS1A01G392200.1 | Wheat | mitochondrion | 34.02 | 36.73 |
| TraesCS1B01G420300.1 | Wheat | mitochondrion | 34.02 | 36.73 |
| TraesCS1D01G400300.1 | Wheat | mitochondrion | 34.02 | 36.73 |
| HORVU1Hr1G086580.1 | Barley | mitochondrion | 34.02 | 36.4 |
| Zm00001d038990_P001 | Maize | cytosol, mitochondrion | 34.43 | 36.21 |
| EES19938 | Sorghum | cytosol, mitochondrion | 33.61 | 35.5 |
| GSMUA_Achr1P11520_001 | Banana | cytosol | 32.38 | 34.96 |
| AT4G18650.1 | Thale cress | cytosol | 25.0 | 26.29 |
| AT4G18680.1 | Thale cress | cytosol | 20.9 | 21.7 |
| AT1G58330.1 | Thale cress | cytosol | 19.26 | 20.89 |
| AT4G18690.1 | Thale cress | cytosol | 23.36 | 20.21 |
| AT1G09950.1 | Thale cress | cytosol | 18.85 | 20.0 |
| AT5G45830.1 | Thale cress | nucleus | 26.23 | 19.81 |
Protein Annotations
| MapMan:15.5.4.5 | EntrezGene:820717 | UniProt:A0A178VKW2 | EMBL:AB493615 | ProteinID:AEE75582.1 | ArrayExpress:AT3G14880 |
| EnsemblPlantsGene:AT3G14880 | RefSeq:AT3G14880 | TAIR:AT3G14880 | RefSeq:AT3G14880-TAIR-G | EnsemblPlants:AT3G14880.1 | TAIR:AT3G14880.1 |
| ProteinID:BAA97051.1 | EMBL:DQ446664 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 |
| GO:GO:0009987 | GO:GO:0043565 | GO:GO:0080167 | InterPro:IPR025422 | RefSeq:NP_188106.2 | ProteinID:OAP05905.1 |
| PFAM:PF14144 | PO:PO:0000036 | PO:PO:0000112 | PO:PO:0003011 | PO:PO:0009052 | PFscan:PS51806 |
| PANTHER:PTHR22952 | PANTHER:PTHR22952:SF195 | UniProt:Q9LKB6 | InterPro:TGA_domain | UniParc:UPI00000A5EEF | SEG:seg |
Description
DNA-binding protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LKB6]
Coordinates
chr3:+:5006526..5008037
Molecular Weight (calculated)
28099.0 Da
IEP (calculated)
6.246
GRAVY (calculated)
-0.557
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQETAIASF KKFQQSWIEQ LRNHLNHLRS AQNHHRNSAT GDEERLREAV DRVMEHFREY HRAKWAATDK DVIEVMASPW ASALERSLQW VGGWRPTTLF
101: HLVYTESSIL FESRIVDILR GFRTGDLSDL SPSQFRVPFV KGRTVSELQC ETVKEENAIT EELSEWQDDA SDLVMGTSSD PDQRIRRLAE IVHRTDDLRL
201: RTITRVVEVL SPLQQAEFLV AAAELRTGVA GWGTSHDRRR SSEV
101: HLVYTESSIL FESRIVDILR GFRTGDLSDL SPSQFRVPFV KGRTVSELQC ETVKEENAIT EELSEWQDDA SDLVMGTSSD PDQRIRRLAE IVHRTDDLRL
201: RTITRVVEVL SPLQQAEFLV AAAELRTGVA GWGTSHDRRR SSEV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.