Factsheet for Bra027297.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97614	Canola	nucleus	100.0	100.0
AT3G14880.1	Thale cress	nucleus	86.08	83.61
Solyc07g062380.1.1	Tomato	nucleus	48.1	50.44
VIT_19s0014g01450.t01	Wine grape	cytosol, mitochondrion, peroxisome	48.1	50.22
VIT_19s0014g01210.t01	Wine grape	cytosol	48.52	49.78
PGSC0003DMT400018207	Potato	nucleus	35.87	49.13
KRH21958	Soybean	cytosol	52.32	46.27
PGSC0003DMT400039657	Potato	cytosol	42.19	44.64
Solyc12g014300.1.1	Tomato	cytosol	29.54	43.21
Os05t0560200-00	Rice	mitochondrion	33.33	35.43
GSMUA_Achr1P11520_001	Banana	cytosol	33.76	35.4
TraesCS1D01G400300.1	Wheat	mitochondrion	33.33	34.96
TraesCS1B01G420300.1	Wheat	mitochondrion	33.33	34.96
TraesCS1A01G392200.1	Wheat	mitochondrion	33.33	34.96
HORVU1Hr1G086580.1	Barley	mitochondrion	33.33	34.65
Zm00001d038990_P001	Maize	cytosol, mitochondrion	33.33	34.05
EES19938	Sorghum	cytosol, mitochondrion	32.49	33.33
Bra013337.1-P	Field mustard	cytosol	22.36	26.11
Bra013338.1-P	Field mustard	cytosol	26.58	25.0
Bra025050.1-P	Field mustard	nucleus	28.27	23.93
Bra017589.1-P	Field mustard	cytosol	27.43	23.21
Bra012582.1-P	Field mustard	cytosol	22.78	21.77
Bra019973.1-P	Field mustard	cytosol, plastid	20.68	21.3
Bra031691.1-P	Field mustard	plastid	19.83	20.35
Bra020997.1-P	Field mustard	nucleus	24.05	19.86

Protein Annotations

MapMan:15.5.4.5	EnsemblPlantsGene:Bra027297	EnsemblPlants:Bra027297.1	EnsemblPlants:Bra027297.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009987	GO:GO:0043565	GO:GO:0080167	InterPro:IPR025422
UniProt:M4EET5	PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF195	InterPro:TGA_domain
UniParc:UPI0002547BF3	:	:	:	:	:

Description

AT3G14880 (E=4e-114) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: DOG1 (DELAY OF GERMINATION 1) (TAIR:AT5G45830.1); Has 368 Blast hits to 367 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 366; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA05:-:20178919..20181181

Molecular Weight (calculated)

27237.2 Da

IEP (calculated)

6.590

GRAVY (calculated)

-0.490

Length

237 amino acids

Sequence
(BLAST)

001: MSQETAIESF KKFQHTWIGQ LQHHLNHLRS VQNHHRNSAT GDEERLREAV QRVMELCREY HRAKLATTEK DVVGVMAAPW SSALERSLHW VGDWRPTTLF
101: HLVYTESSIL FESRIVDILR GFRTGDLSDL SPSQFRKVSE LQCETVKEEN AITEELSEWQ DDASELVMGT VSNLDQRIRR LAEIVHRADD LRLRTITGVV
201: ELLSPLQQAE FLIAAAELRR GVSGWGSSHD RRRSANV

Best Arabidopsis Sequence Match ( AT3G14880.2 )
(BLAST)

001: MSQETAIASF KKFQQSWIEQ LRNHLNHLRS AQNHHRNSAT GDEERLREAV DRVMEHFREY HRAKWAATDK DVIEVMASPW ASALERSLQW VGGWRPTTLF
101: HLVYTESSIL FESRIVDILR GFRTGDLSDL SPSQFRTVSE LQCETVKEEN AITEELSEWQ DDASDLVMGT SSDPDQRIRR LAEIVHRTDD LRLRTITRVV
201: EVLSPLQQAE FLVAAAELRT GVAGWGTSHD RRRSSEV

Arabidopsis Description

DNA-binding protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LKB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.