Factsheet for Bra013337.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002368.1-P
Bra006595.1-P
Bra018296.1-P
Bra033467.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18650.1	Bra018296.1-P	AT3G51920.1	17360592
AT4G18650.1	Bra033467.1-P	AT3G51920.1	17360592
AT4G18650.1	Bra002368.1-P	AT5G21274.1	17360592
AT4G18650.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78882	Canola	cytosol	99.51	84.52
CDX99446	Canola	cytosol	99.01	84.1
AT4G18650.1	Thale cress	cytosol	79.31	69.4
Solyc02g076640.1.1	Tomato	cytosol	20.69	48.28
Solyc02g073580.1.1	Tomato	cytosol	48.77	45.21
PGSC0003DMT400026417	Potato	cytosol	49.26	45.05
KRH21250	Soybean	cytosol	54.19	43.31
KRH11036	Soybean	plastid	53.69	37.59
Zm00001d040624_P001	Maize	cytosol	31.03	28.12
KXG32375	Sorghum	cytosol	30.05	26.52
Zm00001d009087_P001	Maize	cytosol	29.06	26.22
TraesCS2B01G512700.1	Wheat	cytosol	29.06	24.58
TraesCS2A01G486100.1	Wheat	mitochondrion	29.56	24.1
Bra019973.1-P	Field mustard	cytosol, plastid	27.09	23.91
Os01t0306400-01	Rice	nucleus	29.06	22.52
Bra031691.1-P	Field mustard	plastid	25.62	22.51
Bra027297.1-P	Field mustard	nucleus	26.11	22.36
Bra013338.1-P	Field mustard	cytosol	25.12	20.24
Bra012582.1-P	Field mustard	cytosol	23.65	19.35
HORVU2Hr1G108600.1	Barley	cytosol	11.82	18.75
Bra025050.1-P	Field mustard	nucleus	25.12	18.21
Bra017589.1-P	Field mustard	cytosol	24.14	17.5
Bra020997.1-P	Field mustard	nucleus	24.14	17.07

Protein Annotations

MapMan:15.5.4.5	EnsemblPlantsGene:Bra013337	EnsemblPlants:Bra013337.1	EnsemblPlants:Bra013337.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR025422	UniProt:M4DA27	PFAM:PF14144
PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF143	InterPro:TGA_domain	UniParc:UPI0002546268	SEG:seg

Description

AT4G18650 (E=3e-086) | transcription factor-related

Coordinates

chrA01:-:5063716..5064605

Molecular Weight (calculated)

23119.3 Da

IEP (calculated)

9.739

GRAVY (calculated)

-0.143

Length

203 amino acids

Sequence
(BLAST)

001: MSEIELRGLI SKLTAHHKAY YTAKWAAIGE DVLAFFGPVW LNPLEKSCFW LTGWKPSTAF RMLDRLRKSW RPTVVLVEAQ VRRLEELRVK TRFDEERIET
101: EMERYQVAMA DRKMVELARL GCRVGGVEGE STVLVEAAVK GLATRLEKMV KAADCVRLKT LKGILDVLAP PQCVEFLAAA AAFQVQLRRW GNERHNVTHS
201: YGS

Best Arabidopsis Sequence Match ( AT4G18650.1 )
(BLAST)

001: MSKMRNLVEE KFLEFYESWV IQLELYLHQL LIAHNNNTMS ETELRHLISK LTTHHKAYYT AKWAAIREDV LAFFGSVWLN PLENACSWLT GWKPSMVFRM
101: VDRLRKSRVV LVEAQVKKLE ELRVKTKFDE QKIEREMERY QVAMADRKMV ELARLGCHVG GESVMVVEAA VRGLSMGLEK MVKAADCVRL KTLKGILDIL
201: TPPQCVEFLA AAATFQVQLR RWGNRRHYVT HS

Arabidopsis Description

DOGL4Protein DOG1-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84JC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.