CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18650.1	KRG89812	AT5G21274.1	17360592
AT4G18650.1	KRG94975	AT5G21274.1	17360592
AT4G18650.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21250	Soybean	cytosol	78.97	90.16
Bra013337.1-P	Field mustard	cytosol	37.59	53.69
AT4G18650.1	Thale cress	cytosol	42.41	53.02
Solyc02g073580.1.1	Tomato	cytosol	40.0	52.97
PGSC0003DMT400026417	Potato	cytosol	39.66	51.8
CDX78882	Canola	cytosol	42.41	51.46
CDX99446	Canola	cytosol	42.07	51.05
Solyc02g076640.1.1	Tomato	cytosol	14.48	48.28
KRH52855	Soybean	cytosol	18.62	32.34
Zm00001d040624_P001	Maize	cytosol	22.76	29.46
KXG32375	Sorghum	cytosol	22.76	28.7
KRH59621	Soybean	cytosol	27.93	28.42
Zm00001d009087_P001	Maize	cytosol	21.72	28.0
KRH04319	Soybean	cytosol	20.34	27.96
TraesCS2B01G512700.1	Wheat	cytosol	22.76	27.5
TraesCS2A01G486100.1	Wheat	mitochondrion	22.76	26.51
Os01t0306400-01	Rice	nucleus	23.79	26.34
KRH58220	Soybean	cytosol	16.9	25.52
KRH49400	Soybean	cytosol	20.34	25.32
KRH00273	Soybean	cytosol	20.0	25.0
HORVU2Hr1G108600.1	Barley	cytosol	10.34	23.44
KRH21958	Soybean	cytosol	19.31	20.9

Protein Annotations

EntrezGene:100788540	MapMan:15.5.4.5	UniProt:A0A0R0FXZ8	EMBL:ACUP02009173	ncoils:Coil	EnsemblPlantsGene:GLYMA_15G083900
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR025422
EnsemblPlants:KRH11036	ProteinID:KRH11036	ProteinID:KRH11036.1	PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF143	InterPro:TGA_domain	UniParc:UPI00023D23B7	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:-:6423717..6424996

Molecular Weight (calculated)

32969.3 Da

IEP (calculated)

9.931

GRAVY (calculated)

-0.350

Length

290 amino acids

Sequence
(BLAST)

001: MHPITPKHYS LPCPLLLSPS GHTPPLKVTH TFPSLFTSLM KNPVAQSFTE FYDKWVWKLE EILHQLLEVS KQRTQVVKTE QELQVLISKV TSHLKEYYTV
101: KWASAHEDVL VFFSPTWLSP LENAYLWMTG WKPSMVLKLL ETLKKQAASG GDFVMTEEQA RKIEELRKRT RMEEEKVERE MERQQVAMAD RKMVELVKLT
201: TRARNGGGGG GDAVAEVALK GVLAGLERVM KASDCVRLKT LKGVLDVLSP MQCVDFLAAN TAMQLRLRQW GKKKRDMPAG STLNANHHNN

Best Arabidopsis Sequence Match ( AT4G18650.1 )
(BLAST)

001: MSKMRNLVEE KFLEFYESWV IQLELYLHQL LIAHNNNTMS ETELRHLISK LTTHHKAYYT AKWAAIREDV LAFFGSVWLN PLENACSWLT GWKPSMVFRM
101: VDRLRKSRVV LVEAQVKKLE ELRVKTKFDE QKIEREMERY QVAMADRKMV ELARLGCHVG GESVMVVEAA VRGLSMGLEK MVKAADCVRL KTLKGILDIL
201: TPPQCVEFLA AAATFQVQLR RWGNRRHYVT HS

Arabidopsis Description

DOGL4Protein DOG1-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84JC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.