Factsheet for Solyc02g076640.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 3
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18650.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT4G18650.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT4G18650.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT4G18650.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT4G18650.1	Solyc12g099990.1.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g073580.1.1	Tomato	cytosol	88.51	35.16
PGSC0003DMT400026417	Potato	cytosol	85.06	33.33
Bra013337.1-P	Field mustard	cytosol	48.28	20.69
AT4G18650.1	Thale cress	cytosol	50.57	18.97
CDX99446	Canola	cytosol	49.43	17.99
CDX78882	Canola	cytosol	48.28	17.57
KRH21250	Soybean	cytosol	49.43	16.93
Solyc12g014300.1.1	Tomato	cytosol	31.03	16.67
HORVU2Hr1G108600.1	Barley	cytosol	22.99	15.62
Solyc03g006120.2.1	Tomato	cytosol, mitochondrion	33.33	14.57
KRH11036	Soybean	plastid	48.28	14.48
Solyc07g062380.1.1	Tomato	nucleus	35.63	13.72
Zm00001d040624_P001	Maize	cytosol	33.33	12.95
Solyc05g056410.1.1	Tomato	cytosol	40.23	12.82
KXG32375	Sorghum	cytosol	33.33	12.61
Zm00001d009087_P001	Maize	cytosol	31.03	12.0
Solyc09g005610.2.1	Tomato	cytosol	32.18	11.67
Solyc02g072570.1.1	Tomato	cytosol	32.18	11.2
Solyc10g085210.1.1	Tomato	cytosol	29.89	10.57
TraesCS2B01G512700.1	Wheat	cytosol	28.74	10.42
TraesCS2A01G486100.1	Wheat	mitochondrion	28.74	10.04
Os01t0306400-01	Rice	nucleus	29.89	9.92
Solyc04g076970.2.1	Tomato	nucleus	26.44	9.47
Solyc02g073570.1.1	Tomato	nucleus	29.89	9.32

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0043565	InterPro:IPR025422	UniProt:K4B8P1	PFAM:PF14144
PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF143	EnsemblPlantsGene:Solyc02g076640.1	EnsemblPlants:Solyc02g076640.1.1	InterPro:TGA_domain
TMHMM:TMhelix	UniParc:UPI0002767771	:	:	:	:

Description

No Description!

Coordinates

chr2:+:41799960..41800223

Molecular Weight (calculated)

9735.6 Da

IEP (calculated)

6.788

GRAVY (calculated)

-0.202

Length

87 amino acids

Sequence
(BLAST)

1: MTTHHKNYYT AKWAAAHEDI LAFFTPMWLS PLEIVYSWIT GWKPSMAFRL VSGVGGAFSD EELKNIDGLR VKIRGEGNGE ATGCNWG

Best Arabidopsis Sequence Match ( AT4G18650.1 )
(BLAST)

001: MSKMRNLVEE KFLEFYESWV IQLELYLHQL LIAHNNNTMS ETELRHLISK LTTHHKAYYT AKWAAIREDV LAFFGSVWLN PLENACSWLT GWKPSMVFRM
101: VDRLRKSRVV LVEAQVKKLE ELRVKTKFDE QKIEREMERY QVAMADRKMV ELARLGCHVG GESVMVVEAA VRGLSMGLEK MVKAADCVRL KTLKGILDIL
201: TPPQCVEFLA AAATFQVQLR RWGNRRHYVT HS

Arabidopsis Description

DOGL4Protein DOG1-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84JC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.