CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18650.1	KRG89812	AT5G21274.1	17360592
AT4G18650.1	KRG94975	AT5G21274.1	17360592
AT4G18650.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11036	Soybean	plastid	90.16	78.97
Solyc02g073580.1.1	Tomato	cytosol	47.24	54.79
Bra013337.1-P	Field mustard	cytosol	43.31	54.19
PGSC0003DMT400026417	Potato	cytosol	47.24	54.05
AT4G18650.1	Thale cress	cytosol	48.43	53.02
CDX78882	Canola	cytosol	48.82	51.88
CDX99446	Canola	cytosol	48.43	51.46
Solyc02g076640.1.1	Tomato	cytosol	16.93	49.43
KRH52855	Soybean	cytosol	20.87	31.74
KXG32375	Sorghum	cytosol	26.38	29.13
Zm00001d040624_P001	Maize	cytosol	25.59	29.02
KRH59621	Soybean	cytosol	32.28	28.77
KRH04319	Soybean	cytosol	23.23	27.96
Zm00001d009087_P001	Maize	cytosol	24.41	27.56
TraesCS2B01G512700.1	Wheat	cytosol	25.59	27.08
TraesCS2A01G486100.1	Wheat	mitochondrion	25.59	26.1
KRH49400	Soybean	cytosol	23.62	25.75
KRH58220	Soybean	cytosol	19.29	25.52
KRH00273	Soybean	cytosol	23.23	25.43
Os01t0306400-01	Rice	nucleus	25.59	24.81
HORVU2Hr1G108600.1	Barley	cytosol	12.2	24.22
KRH21958	Soybean	cytosol	22.83	21.64

Protein Annotations

EntrezGene:100808459	MapMan:15.5.4.5	EMBL:ACUP02008350	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G228600	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1M1S8	InterPro:IPR025422
EnsemblPlants:KRH21250	ProteinID:KRH21250	ProteinID:KRH21250.1	PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF143	InterPro:TGA_domain	UniParc:UPI000233B1EE	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr13:+:34086707..34087892

Molecular Weight (calculated)

28973.3 Da

IEP (calculated)

9.036

GRAVY (calculated)

-0.315

Length

254 amino acids

Sequence
(BLAST)

001: MKNPVAESFT DFYDKWVWKL EEILHQLLEV SKQRTEVVKT EQELQVLVSK VTSHLKEYYT IKWASAHEEV LVFFSPAWLS PLENAYLWIT GWKPSMVFKL
101: LETLKKQASG GDFVMTEEQV RKIEELRKRT RMEEEKVERE MERQQVAMAD RKMVELVKLT GRARNNGSGG GGDAVDAVVE VALKGVLAGL ERVMKASDCV
201: RLKTLKGVLD VLSPMQCVDF LAANIAMQLR LRQWGKKKRD IAAAGSTLNV NQDN

Best Arabidopsis Sequence Match ( AT4G18650.1 )
(BLAST)

001: MSKMRNLVEE KFLEFYESWV IQLELYLHQL LIAHNNNTMS ETELRHLISK LTTHHKAYYT AKWAAIREDV LAFFGSVWLN PLENACSWLT GWKPSMVFRM
101: VDRLRKSRVV LVEAQVKKLE ELRVKTKFDE QKIEREMERY QVAMADRKMV ELARLGCHVG GESVMVVEAA VRGLSMGLEK MVKAADCVRL KTLKGILDIL
201: TPPQCVEFLA AAATFQVQLR RWGNRRHYVT HS

Arabidopsis Description

DOGL4Protein DOG1-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84JC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.