Factsheet for Solyc02g073580.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18650.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT4G18650.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT4G18650.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT4G18650.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT4G18650.1	Solyc12g099990.1.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026417	Potato	cytosol	94.52	93.24
Solyc02g076640.1.1	Tomato	cytosol	35.16	88.51
AT4G18650.1	Thale cress	cytosol	52.51	49.57
Bra013337.1-P	Field mustard	cytosol	45.21	48.77
KRH21250	Soybean	cytosol	54.79	47.24
CDX99446	Canola	cytosol	51.14	46.86
CDX78882	Canola	cytosol	50.68	46.44
KRH11036	Soybean	plastid	52.97	40.0
Solyc07g062380.1.1	Tomato	nucleus	29.22	28.32
Solyc09g005610.2.1	Tomato	cytosol	28.77	26.25
Solyc05g056410.1.1	Tomato	cytosol	31.96	25.64
Solyc12g014300.1.1	Tomato	cytosol	18.72	25.31
Solyc10g085210.1.1	Tomato	cytosol	28.31	25.2
Solyc03g006120.2.1	Tomato	cytosol, mitochondrion	22.83	25.13
Solyc04g076970.2.1	Tomato	nucleus	26.94	24.28
Zm00001d040624_P001	Maize	cytosol	23.74	23.21
KXG32375	Sorghum	cytosol	24.2	23.04
Solyc02g073570.1.1	Tomato	nucleus	28.77	22.58
Zm00001d009087_P001	Maize	cytosol	22.83	22.22
Solyc02g072570.1.1	Tomato	cytosol	25.11	22.0
TraesCS2B01G512700.1	Wheat	cytosol	23.29	21.25
TraesCS2A01G486100.1	Wheat	mitochondrion	23.29	20.48
HORVU2Hr1G108600.1	Barley	cytosol	11.87	20.31
Os01t0306400-01	Rice	nucleus	24.2	20.23

Protein Annotations

MapMan:15.5.4.5	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR025422	UniProt:K4B8N3	PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF143	EnsemblPlantsGene:Solyc02g073580.1	EnsemblPlants:Solyc02g073580.1.1	InterPro:TGA_domain	UniParc:UPI0002767769	SEG:seg

Description

No Description!

Coordinates

chr2:+:41748166..41748825

Molecular Weight (calculated)

25405.1 Da

IEP (calculated)

8.436

GRAVY (calculated)

-0.266

Length

219 amino acids

Sequence
(BLAST)

001: MTSQVAENFT KYFENWMIQL EELLKQLVIV PRETSYVNDH ELLVSKMTTH HKNYYTAKWA AAHEDILAFF TPMWLSPLEI VYSWITGWKP SMAFRLVSGG
101: GGAFSDEELK NIDGLRVKIR GEEEKVEREM ERQQVAIGDR KMVELARIRN DNDELVELAL KGLRMSLERV MKMADCVRLK TLKGLLEILS PLQSVDFLAA
201: ISTIQIQMRK RGRKRINVD

Best Arabidopsis Sequence Match ( AT4G18650.1 )
(BLAST)

001: MSKMRNLVEE KFLEFYESWV IQLELYLHQL LIAHNNNTMS ETELRHLISK LTTHHKAYYT AKWAAIREDV LAFFGSVWLN PLENACSWLT GWKPSMVFRM
101: VDRLRKSRVV LVEAQVKKLE ELRVKTKFDE QKIEREMERY QVAMADRKMV ELARLGCHVG GESVMVVEAA VRGLSMGLEK MVKAADCVRL KTLKGILDIL
201: TPPQCVEFLA AAATFQVQLR RWGNRRHYVT HS

Arabidopsis Description

DOGL4Protein DOG1-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84JC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.