Factsheet for Solyc05g056410.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059950	Potato	cytosol	86.45	83.1
VIT_07s0031g02670.t01	Wine grape	nucleus	50.55	54.12
KRH59621	Soybean	cytosol	47.99	45.96
HORVU3Hr1G018820.1	Barley	extracellular	28.57	44.07
GSMUA_Achr5P28280_001	Banana	cytosol	43.22	43.7
TraesCS3A01G103500.1	Wheat	cytosol	40.66	42.69
TraesCS3D01G105800.1	Wheat	cytosol	40.29	42.31
Os01t0159000-01	Rice	plastid	27.84	41.99
TraesCS3B01G120900.1	Wheat	cytosol	39.93	41.92
Solyc02g076640.1.1	Tomato	cytosol	12.82	40.23
KRH58220	Soybean	cytosol	28.21	40.1
Zm00001d039771_P001	Maize	plastid	38.1	38.24
OQU86274	Sorghum	plastid	38.83	37.99
Solyc12g014300.1.1	Tomato	cytosol	21.98	37.04
KRH04319	Soybean	cytosol	28.57	36.97
Solyc07g062380.1.1	Tomato	nucleus	29.67	35.84
Solyc03g006120.2.1	Tomato	cytosol, mitochondrion	24.54	33.67
Solyc02g073570.1.1	Tomato	nucleus	33.33	32.62
TraesCS2A01G010800.1	Wheat	cytosol	23.44	32.32
Solyc02g073580.1.1	Tomato	cytosol	25.64	31.96
Solyc09g005610.2.1	Tomato	cytosol	27.11	30.83
Solyc02g072570.1.1	Tomato	cytosol	27.11	29.6
Solyc10g085210.1.1	Tomato	cytosol	25.27	28.05
Solyc04g076970.2.1	Tomato	nucleus	24.54	27.57

Protein Annotations

MapMan:15.5.4.5	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR025422	UniProt:K4C2W5	PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF268	EnsemblPlantsGene:Solyc05g056410.1	EnsemblPlants:Solyc05g056410.1.1	InterPro:TGA_domain	UniParc:UPI0002765917	SEG:seg

Description

No Description!

Coordinates

chr5:-:65719198..65720019

Molecular Weight (calculated)

31338.4 Da

IEP (calculated)

6.052

GRAVY (calculated)

-0.448

Length

273 amino acids

Sequence
(BLAST)

001: MMSSSKNGKS FHKFFESWLV KQSEDLDELV RASEEYKNNN DMLLSPLIHS VVKHYEEYYR EKSQYAASDV LGMLHPSWLS NLEDAFLWIG GWRPSMAFHL
101: LYSKSGIQLE ANLHELIRGF SKEDLGNLSG QQLGLIDELQ HKTISEERKL SEKLAIVQES VADTSMVELS HVVSELMREQ LVVHEEEEKK IGKNISKKEE
201: SLLDLLKKAD DLRLSTIKEI LRISTPIQSV HFLIAAAELH LRVHEWGKNK DALLSPHKWS CQTINDEGTS VRN

Best Arabidopsis Sequence Match ( AT3G14880.2 )
(BLAST)

001: MSQETAIASF KKFQQSWIEQ LRNHLNHLRS AQNHHRNSAT GDEERLREAV DRVMEHFREY HRAKWAATDK DVIEVMASPW ASALERSLQW VGGWRPTTLF
101: HLVYTESSIL FESRIVDILR GFRTGDLSDL SPSQFRTVSE LQCETVKEEN AITEELSEWQ DDASDLVMGT SSDPDQRIRR LAEIVHRTDD LRLRTITRVV
201: EVLSPLQQAE FLVAAAELRT GVAGWGTSHD RRRSSEV

Arabidopsis Description

DNA-binding protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LKB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.