Factsheet for Solyc12g014300.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039657	Potato	cytosol	87.04	62.95
Solyc07g062380.1.1	Tomato	nucleus	59.88	42.92
VIT_19s0014g01450.t01	Wine grape	cytosol, mitochondrion, peroxisome	54.32	38.77
VIT_19s0014g01210.t01	Wine grape	cytosol	48.77	34.2
Solyc02g076640.1.1	Tomato	cytosol	16.67	31.03
Bra027297.1-P	Field mustard	nucleus	43.21	29.54
CDX97614	Canola	nucleus	43.21	29.54
CDY70896	Canola	nucleus	41.98	28.69
CDX98510	Canola	nucleus	41.98	28.69
AT3G14880.1	Thale cress	nucleus	43.21	28.69
KRH21958	Soybean	cytosol	46.91	28.36
GSMUA_Achr1P11520_001	Banana	cytosol	31.48	22.57
TraesCS1D01G400300.1	Wheat	mitochondrion	30.86	22.12
TraesCS1B01G420300.1	Wheat	mitochondrion	30.86	22.12
TraesCS1A01G392200.1	Wheat	mitochondrion	30.86	22.12
Solyc05g056410.1.1	Tomato	cytosol	37.04	21.98
HORVU1Hr1G086580.1	Barley	mitochondrion	30.86	21.93
Os05t0560200-00	Rice	mitochondrion	29.63	21.52
EES19938	Sorghum	cytosol, mitochondrion	29.63	20.78
Zm00001d038990_P001	Maize	cytosol, mitochondrion	29.01	20.26
Solyc03g006120.2.1	Tomato	cytosol, mitochondrion	24.07	19.6
Solyc02g073580.1.1	Tomato	cytosol	25.31	18.72
Solyc02g072570.1.1	Tomato	cytosol	28.4	18.4
Solyc02g073570.1.1	Tomato	nucleus	30.86	17.92
Solyc09g005610.2.1	Tomato	cytosol	25.31	17.08
Solyc10g085210.1.1	Tomato	cytosol	25.31	16.67
Solyc04g076970.2.1	Tomato	nucleus	24.69	16.46

Protein Annotations

EnsemblPlants:Solyc12g014300.1.1	EnsemblPlantsGene:Solyc12g014300.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR025422	InterPro:TGA_domain	PANTHER:PTHR22952	PANTHER:PTHR22952:SF195	PFAM:PF14144
PFscan:PS51806	UniParc:UPI000276A7CD	UniProt:K4DCW5	MapMan:15.5.4.5	:	:

Description

No Description!

Coordinates

chr12:+:5104487..5104975

Molecular Weight (calculated)

18973.5 Da

IEP (calculated)

6.503

GRAVY (calculated)

-0.428

Length

162 amino acids

Sequence
(BLAST)

001: MTKFQKFHEE WHGHLRELVQ QMSKLPKFCT TNQDEQNTKL LIQKVISHIN EYYRVKSLAA KNDILYIFSA PWSNSLERSL YWIAGWRPTT AFHIIYSECG
101: IQLESHITNI LNGFRNGDLA DLSPDQLTRF SELQCETIQQ ENNITEQLSN WQVSTSICSF LT

Best Arabidopsis Sequence Match ( AT3G14880.2 )
(BLAST)

001: MSQETAIASF KKFQQSWIEQ LRNHLNHLRS AQNHHRNSAT GDEERLREAV DRVMEHFREY HRAKWAATDK DVIEVMASPW ASALERSLQW VGGWRPTTLF
101: HLVYTESSIL FESRIVDILR GFRTGDLSDL SPSQFRTVSE LQCETVKEEN AITEELSEWQ DDASDLVMGT SSDPDQRIRR LAEIVHRTDD LRLRTITRVV
201: EVLSPLQQAE FLVAAAELRT GVAGWGTSHD RRRSSEV

Arabidopsis Description

DNA-binding protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LKB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.