Factsheet for VIT_19s0014g01210.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g01450.t01	Wine grape	cytosol, mitochondrion, peroxisome	61.04	62.11
Solyc07g062380.1.1	Tomato	nucleus	53.25	54.42
PGSC0003DMT400018207	Potato	nucleus	39.39	52.6
Solyc12g014300.1.1	Tomato	cytosol	34.2	48.77
Bra027297.1-P	Field mustard	nucleus	49.78	48.52
CDY70896	Canola	nucleus	49.78	48.52
CDX98510	Canola	nucleus	49.78	48.52
CDX97614	Canola	nucleus	49.78	48.52
AT3G14880.1	Thale cress	nucleus	49.35	46.72
PGSC0003DMT400039657	Potato	cytosol	44.59	45.98
KRH21958	Soybean	cytosol	48.05	41.42
GSMUA_Achr1P11520_001	Banana	cytosol	38.96	39.82
HORVU1Hr1G086580.1	Barley	mitochondrion	37.66	38.16
TraesCS1A01G392200.1	Wheat	mitochondrion	37.23	38.05
TraesCS1B01G420300.1	Wheat	mitochondrion	37.23	38.05
TraesCS1D01G400300.1	Wheat	mitochondrion	37.23	38.05
Os05t0560200-00	Rice	mitochondrion	35.93	37.22
Zm00001d038990_P001	Maize	cytosol, mitochondrion	35.93	35.78
EES19938	Sorghum	cytosol, mitochondrion	35.5	35.5
VIT_07s0031g02670.t01	Wine grape	nucleus	36.8	33.33
VIT_19s0014g01220.t01	Wine grape	nucleus	25.54	23.98

Protein Annotations

EntrezGene:100854900	wikigene:100854900	MapMan:15.5.4.5	ProteinID:CCB46243	ProteinID:CCB46243.1	UniProt:F6H2M5
EMBL:FN595229	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR025422	EntrezGene:LOC100854900	wikigene:LOC100854900	PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF195	InterPro:TGA_domain	UniParc:UPI000198588D	ArrayExpress:VIT_19s0014g01210	EnsemblPlantsGene:VIT_19s0014g01210	EnsemblPlants:VIT_19s0014g01210.t01
unigene:Vvi.22768	RefSeq:XP_003634664	RefSeq:XP_003634664.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr19:-:1342984..1343783

Molecular Weight (calculated)

26488.6 Da

IEP (calculated)

6.280

GRAVY (calculated)

-0.126

Length

231 amino acids

Sequence
(BLAST)

001: MSFESFNEAW FDHLHDLLQQ LRLAPKATAP DRDRALLDLV HKVRTHYSQY YRAMSYTARH DVVSLFAAPW SSSLERSLHW VAGWRPTIAF HLIYTHSSIL
101: FETHIVDILR GAHNGDLGDL SPAQLQRVSE LQCQTVGEEN EITAELSECF NSVSGLVGAV FDPVENVERL RNVVERAENL RFRTICSVVE ILNPQQAVEF
201: LVAVMELQFW VRGMGLCHDR VRENLRGFRG L

Best Arabidopsis Sequence Match ( AT3G14880.2 )
(BLAST)

001: MSQETAIASF KKFQQSWIEQ LRNHLNHLRS AQNHHRNSAT GDEERLREAV DRVMEHFREY HRAKWAATDK DVIEVMASPW ASALERSLQW VGGWRPTTLF
101: HLVYTESSIL FESRIVDILR GFRTGDLSDL SPSQFRTVSE LQCETVKEEN AITEELSEWQ DDASDLVMGT SSDPDQRIRR LAEIVHRTDD LRLRTITRVV
201: EVLSPLQQAE FLVAAAELRT GVAGWGTSHD RRRSSEV

Arabidopsis Description

DNA-binding protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LKB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.