Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93460 | Canola | cytosol, plastid | 99.13 | 99.13 |
| CDX94928 | Canola | plastid | 95.65 | 95.65 |
| Bra031691.1-P | Field mustard | plastid | 85.22 | 84.85 |
| AT1G09950.1 | Thale cress | cytosol | 81.74 | 81.74 |
| KRH52855 | Soybean | cytosol | 27.83 | 38.32 |
| Solyc04g076970.2.1 | Tomato | nucleus | 36.52 | 34.57 |
| PGSC0003DMT400012745 | Potato | cytosol | 34.78 | 33.9 |
| Zm00001d040624_P001 | Maize | cytosol | 29.57 | 30.36 |
| Zm00001d009087_P001 | Maize | cytosol | 28.7 | 29.33 |
| KXG32375 | Sorghum | cytosol | 29.13 | 29.13 |
| Bra013337.1-P | Field mustard | cytosol | 23.91 | 27.09 |
| TraesCS2B01G512700.1 | Wheat | cytosol | 28.26 | 27.08 |
| TraesCS2A01G486100.1 | Wheat | mitochondrion | 28.7 | 26.51 |
| Os01t0306400-01 | Rice | nucleus | 30.0 | 26.34 |
| HORVU2Hr1G108600.1 | Barley | cytosol | 13.04 | 23.44 |
| Bra013338.1-P | Field mustard | cytosol | 25.22 | 23.02 |
| Bra012582.1-P | Field mustard | cytosol | 23.48 | 21.77 |
| Bra027297.1-P | Field mustard | nucleus | 21.3 | 20.68 |
| Bra020997.1-P | Field mustard | nucleus | 25.22 | 20.21 |
| Bra017589.1-P | Field mustard | cytosol | 23.48 | 19.29 |
| Bra025050.1-P | Field mustard | nucleus | 22.61 | 18.57 |
Protein Annotations
| MapMan:15.5.4.5 | EnsemblPlantsGene:Bra019973 | EnsemblPlants:Bra019973.1 | EnsemblPlants:Bra019973.1-P | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR025422 | UniProt:M4DTY0 | PFAM:PF14144 |
| PFscan:PS51806 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF145 | InterPro:TGA_domain | UniParc:UPI000253E98B | SEG:seg |
Description
AT1G09950 (E=8e-093) | transcription factor-related
Coordinates
chrA06:-:3427896..3428588
Molecular Weight (calculated)
26263.3 Da
IEP (calculated)
6.788
GRAVY (calculated)
-0.293
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVTSSSQSF SSFVNGWLIR HRYFVEQLTC ASSFDETNEE QQQSLVTQFL SHCLQYYQEK SSAVSLAGDN VFTFFCPPWF TSYARLILWV GDFKPSLVFK
101: LTDSTVDDLT RHQRDRISSL RSETRRRERD VMRDFALVQQ SVADPPVMLA ARRVGARGLV DGEESDLEEA MEVLKRGMAR AMNSADELRC STVGKVVEIL
201: TPSQAVKVLR TIGELHLRLR ELVGLERHHQ
101: LTDSTVDDLT RHQRDRISSL RSETRRRERD VMRDFALVQQ SVADPPVMLA ARRVGARGLV DGEESDLEEA MEVLKRGMAR AMNSADELRC STVGKVVEIL
201: TPSQAVKVLR TIGELHLRLR ELVGLERHHQ
001: MPNTSSSQSF TIFVDGWLIR HRYFVEQLMC ASSLDETNRI SLEEQQSLVA QFLSHCLQYY QEKFASVSLA GDNVFTFFCP PWFNSYAKLI LWVGDFKPSL
101: VFKLTEVSVA DLTRHQKDRI SSLKSETRRK EREVMRDFAL VQQSVADPPV MLAARRVGAV GMVDGEETDL EEAMEVLKAG MAAAMNNADQ LRCSTVGKVV
201: EILTPPQAIK VLRTIGQLHL RLRDRDQERA
101: VFKLTEVSVA DLTRHQKDRI SSLKSETRRK EREVMRDFAL VQQSVADPPV MLAARRVGAV GMVDGEETDL EEAMEVLKAG MAAAMNNADQ LRCSTVGKVV
201: EILTPPQAIK VLRTIGQLHL RLRDRDQERA
Arabidopsis Description
RAS1At1g09950 [Source:UniProtKB/TrEMBL;Acc:O04515]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.