Factsheet for PGSC0003DMT400011369

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g005610.2.1	Tomato	cytosol	90.0	90.0
PGSC0003DMT400028832	Potato	cytosol	28.33	61.26
PGSC0003DMT400028833	Potato	cytosol	62.5	60.48
KRH49400	Soybean	cytosol	41.67	42.92
KRH00273	Soybean	cytosol	41.25	42.67
PGSC0003DMT400012745	Potato	cytosol	33.33	33.9
Zm00001d040624_P001	Maize	cytosol	28.33	30.36
KXG32375	Sorghum	cytosol	28.75	30.0
Zm00001d009087_P001	Maize	cytosol	26.67	28.44
PGSC0003DMT400026417	Potato	cytosol	25.83	27.93
PGSC0003DMT400039657	Potato	cytosol	25.83	27.68
PGSC0003DMT400088909	Potato	nucleus	27.92	27.46
PGSC0003DMT400073292	Potato	cytosol	27.92	26.8
TraesCS2B01G512700.1	Wheat	cytosol	26.67	26.67
Os01t0306400-01	Rice	nucleus	28.75	26.34
PGSC0003DMT400073296	Potato	nucleus	27.5	26.29
PGSC0003DMT400068759	Potato	cytosol	25.42	26.07
PGSC0003DMT400018207	Potato	nucleus	18.75	26.01
PGSC0003DMT400059950	Potato	cytosol	30.42	25.7
PGSC0003DMT400073133	Potato	nucleus	29.58	25.36
TraesCS2A01G486100.1	Wheat	mitochondrion	26.25	25.3
HORVU2Hr1G108600.1	Barley	cytosol	12.92	24.22

Protein Annotations

EntrezGene:102588234	MapMan:15.5.4.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR025422	UniProt:M0ZZG8	PFAM:PF14144	EnsemblPlantsGene:PGSC0003DMG400004453	PGSC:PGSC0003DMG400004453
EnsemblPlants:PGSC0003DMT400011369	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF145	InterPro:TGA_domain	UniParc:UPI000295B51B
RefSeq:XP_006366944.1	SEG:seg	:	:	:	:

Description

Transcription factor HBP-1b [Source:PGSC_GENE;Acc:PGSC0003DMG400004453]

Coordinates

chr9:+:7843516..7845523

Molecular Weight (calculated)

27695.4 Da

IEP (calculated)

5.026

GRAVY (calculated)

-0.279

Length

240 amino acids

Sequence
(BLAST)

001: MAPGSSRANI SVGSFEAFLQ GWFLRQEQFL NELTITQTTL DESIMRNLIS RILSHYQEYY EEKSRMSHIN VFYMFSPSWF TPLEKSFLWI AGFKPGLAFP
101: LVMNSVNDLS ENQIERINRL RIETRIEERN LMDKLAKLQE SVAAPPLMGL AQQYGMEMLR DGEITEVDEE IEILRTAVEN VVTDADRLRT RTADSVVGIL
201: NPLQSLKFLA AAAQLQLRIR MVGMQREAER RHQMDTSNGW

Best Arabidopsis Sequence Match ( AT1G58330.1 )
(BLAST)

001: MPITSSSETF ASFFNDWLCR HRQFVQQLAH LADETTIVTP IEEESLVSNF LSHYLQYYEE KSVAMSVAGD DIYDFFSPPW LSSYEKLILW IGGFKPGMVF
101: KLITTSVNDL TSHQIDQLES IRLETKRRER DLMRRFALLQ QSVGDPLLMV PFRRIGVLRL GEGEQPEMED AMEVLKVEMI KAMKNADQLR CVTVGKVVEV
201: LNPRQSIKLL RAAGEFYLRL RDLGV

Arabidopsis Description

ZW2At1g58330 [Source:UniProtKB/TrEMBL;Acc:Q9SLV1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.