Factsheet for PGSC0003DMT400028833

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028832	Potato	cytosol	44.76	100.0
Solyc10g085210.1.1	Tomato	cytosol	85.89	86.59
PGSC0003DMT400011369	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	60.48	62.5
KRH49400	Soybean	cytosol	39.52	42.06
KRH00273	Soybean	cytosol	38.71	41.38
PGSC0003DMT400012745	Potato	cytosol	30.65	32.2
Zm00001d040624_P001	Maize	cytosol	28.63	31.7
KXG32375	Sorghum	cytosol	29.03	31.3
Zm00001d009087_P001	Maize	cytosol	27.42	30.22
PGSC0003DMT400026417	Potato	cytosol	25.4	28.38
TraesCS2B01G512700.1	Wheat	cytosol	26.61	27.5
Os01t0306400-01	Rice	nucleus	28.23	26.72
TraesCS2A01G486100.1	Wheat	mitochondrion	26.61	26.51
PGSC0003DMT400039657	Potato	cytosol	23.79	26.34
HORVU2Hr1G108600.1	Barley	cytosol	13.31	25.78
PGSC0003DMT400059950	Potato	cytosol	29.44	25.7
PGSC0003DMT400018207	Potato	nucleus	17.34	24.86
PGSC0003DMT400088909	Potato	nucleus	24.19	24.59
PGSC0003DMT400073292	Potato	cytosol	23.79	23.6
PGSC0003DMT400073133	Potato	nucleus	26.61	23.57
PGSC0003DMT400073296	Potato	nucleus	23.39	23.11
PGSC0003DMT400068759	Potato	cytosol	21.77	23.08

Protein Annotations

EntrezGene:102579024	MapMan:15.5.4.5	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR025422	UniProt:M1ARS9	PFAM:PF14144	EnsemblPlantsGene:PGSC0003DMG400011102
PGSC:PGSC0003DMG400011102	EnsemblPlants:PGSC0003DMT400028833	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF145	InterPro:TGA_domain
UniParc:UPI00029524B6	RefSeq:XP_006338981.1	RefSeq:XP_015164801.1	SEG:seg	:	:

Description

Transcription factor HBP-1b [Source:PGSC_GENE;Acc:PGSC0003DMG400011102]

Coordinates

chr10:+:53852537..53855426

Molecular Weight (calculated)

28938.0 Da

IEP (calculated)

4.694

GRAVY (calculated)

-0.619

Length

248 amino acids

Sequence
(BLAST)

001: MPGGSYRSSS HDDNSFEVFL EGWLIRQEQF LNELVVAQDT FDDQENDMRD LISRVLAHYQ EYYEEKSRMT HRNVFRAFSP TWFSPLERSF LWITGFNPGL
101: IFNLVTDSVN NLSEHQVQRL NWLKHETKAE ERSLTEEMTQ IQESVASPPL ADLARRVGMQ LIYTDNINTE IEEIDGNIDQ LKTALENVVT DADRLRTRTA
201: ERVVGLLNPL QSLKFLSAVG QLQLRVRMMG MEREAERQQQ RNEHSNGW

Best Arabidopsis Sequence Match ( AT1G58330.1 )
(BLAST)

001: MPITSSSETF ASFFNDWLCR HRQFVQQLAH LADETTIVTP IEEESLVSNF LSHYLQYYEE KSVAMSVAGD DIYDFFSPPW LSSYEKLILW IGGFKPGMVF
101: KLITTSVNDL TSHQIDQLES IRLETKRRER DLMRRFALLQ QSVGDPLLMV PFRRIGVLRL GEGEQPEMED AMEVLKVEMI KAMKNADQLR CVTVGKVVEV
201: LNPRQSIKLL RAAGEFYLRL RDLGV

Arabidopsis Description

ZW2At1g58330 [Source:UniProtKB/TrEMBL;Acc:Q9SLV1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.