Factsheet for Os02t0462800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 25081037

gfp PMID: 25081037 doi

M Han, CY Kim, J Lee, SK Lee, JS Jeon

Graduate School of Biotechnology and Crop Biotech Institute, Kyung Hee University, Yongin 446-701, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0267900-01
Os01t0279300-01
Os01t0810300-01
Os03t0319300-01
Os05t0491000-01
Os05t0491100-01
Os07t0687200-02
Os10t0476600-01
Os12t0603800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24570.1	Os01t0267900-01	AT3G56800.1	15733871
AT2G24570.1	Os01t0279300-01	AT3G56800.1	15733871
AT2G24570.1	Os01t0810300-01	AT3G56800.1	15733871
AT2G24570.1	Os03t0319300-01	AT3G56800.1	15733871
AT2G24570.1	Os05t0491000-01	AT3G56800.1	15733871
AT2G24570.1	Os05t0491100-01	AT3G56800.1	15733871
AT2G24570.1	Os07t0687200-02	AT3G56800.1	15733871
AT2G24570.1	Os12t0603800-00	AT3G56800.1	15733871
AT2G24570.1	Os10t0476600-01	AT5G28900.1	21798944
AT4G31550.1	Os01t0267900-01	AT3G56800.1	15733871
AT4G31550.1	Os01t0279300-01	AT3G56800.1	15733871
AT4G31550.1	Os01t0810300-01	AT3G56800.1	15733871
AT4G31550.1	Os03t0319300-01	AT3G56800.1	15733871
AT4G31550.1	Os05t0491000-01	AT3G56800.1	15733871
AT4G31550.1	Os05t0491100-01	AT3G56800.1	15733871
AT4G31550.1	Os07t0687200-02	AT3G56800.1	15733871
AT4G31550.1	Os12t0603800-00	AT3G56800.1	15733871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU84894	Sorghum	nucleus	60.08	50.84
Zm00001d016457_P001	Maize	nucleus	58.5	45.54
GSMUA_Achr9P22950_001	Banana	nucleus	44.66	40.21
Os04t0287400-01	Rice	nucleus	48.62	37.73
CDY20325	Canola	nucleus	40.32	36.04
Os04t0605100-01	Rice	nucleus	43.87	35.92
CDX68763	Canola	nucleus	41.11	34.9
CDY36432	Canola	nucleus	38.74	34.75
CDY60852	Canola	nucleus	40.71	34.56
CDX72310	Canola	nucleus	38.74	34.51
GSMUA_Achr3P27880_001	Banana	nucleus	37.15	34.18
CDY23304	Canola	nucleus	41.11	33.99
CDY13441	Canola	nucleus	38.74	33.45
PGSC0003DMT400024632	Potato	nucleus	43.48	32.93
Solyc08g006320.2.1	Tomato	nucleus	42.69	32.93
AT4G31550.1	Thale cress	nucleus	42.29	32.92
AT2G24570.1	Thale cress	nucleus	41.5	32.71
Bra011282.1-P	Field mustard	nucleus	41.5	32.61
PGSC0003DMT400075531	Potato	nucleus	39.92	32.37
Bra032084.1-P	Field mustard	nucleus	41.5	32.31
CDY45583	Canola	nucleus	41.11	32.0
Bra010231.1-P	Field mustard	nucleus	41.5	31.63
Bra023998.1-P	Field mustard	nucleus	40.71	31.4
Os08t0235800-00	Rice	nucleus	42.29	31.1
Solyc12g096350.1.1	Tomato	nucleus	39.13	29.29
Os12t0597700-01	Rice	nucleus	35.97	25.07
Os03t0741400-01	Rice	nucleus	36.36	23.77
Os03t0798500-01	Rice	nucleus	30.83	20.53
Os01t0750100-03	Rice	nucleus	22.13	17.72
Os01t0624700-01	Rice	nucleus	22.13	16.09
Os02t0265200-01	Rice	nucleus	22.92	16.07
Os01t0730700-01	Rice	nucleus	18.58	14.73
Os06t0504900-00	Rice	nucleus	20.95	13.73
Os04t0597300-01	Rice	nucleus	21.74	13.29
Os03t0855100-01	Rice	nucleus	20.16	13.18
Os02t0698800-01	Rice	nucleus	22.92	11.46

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:4329309	EMBL:AK110587	ProteinID:AKM05615.1	ProteinID:BAD19817.1
ProteinID:BAF08714.1	ProteinID:BAS78566.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EnsemblPlantsGene:Os02g0462800	EnsemblPlants:Os02t0462800-01	PFAM:PF03106
PFAM:PF10533	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF15	UniProt:Q6K4Y7	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI000037597D	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_015624842.1	InterPro:Zn-cluster-dom
SEG:seg	:	:	:	:	:

Description

WRKY GENE 42WRKY transcription factor 42, Transcriptional repressor, Promotion of leaf senescence (Os02t0462800-01)

Coordinates

chr2:+:15521497..15522722

Molecular Weight (calculated)

27142.5 Da

IEP (calculated)

9.932

GRAVY (calculated)

-0.843

Length

253 amino acids

Sequence
(BLAST)

001: MADPFPAAAR GGEQGGGTAG QLVSTPSRLR TAVASMLNRT GHARFRRAAP VVVQEEEDEA AAAARDAVVR CDGLSASASS SFPSSVTGVT GDGSVSNARA
101: VLPAAGDGDK PPPMQSASDY ASDGRLKRSS DDDGERCHCS KKKRKASWRA RRRIRVPAIS SRNADIPADD YSWRKYGQKP IKGSPYPRGY YKCSTVRGCP
201: ARKHVERDPG EPAMLIVTYD GDHRHGEPGH RRPDEAATTT EHRTTDQTTG RLL

Best Arabidopsis Sequence Match ( AT4G24240.1 )
(BLAST)

001: MTVELMMSSY SGGGGGGDGF PAIAAAAKME DTALREAASA GIHGVEEFLK LIGQSQQPTE KSQTEITAVT DVAVNSFKKV ISLLGRSRTG HARFRRAPAS
101: TQTPFKQTPV VEEEVEVEEK KPETSSVLTK QKTEQYHGGG SAFRVYCPTP IHRRPPLSHN NNNNQNQTKN GSSSSSPPML ANGAPSTINF APSPPVSATN
201: SFMSSHRCDT DSTHMSSGFE FTNPSQLSGS RGKPPLSSAS LKRRCNSSPS SRCHCSKKRK SRVKRVIRVP AVSSKMADIP SDEFSWRKYG QKPIKGSPHP
301: RGYYKCSSVR GCPARKHVER ALDDAMMLIV TYEGDHNHAL VLETTTMNHD KTL

Arabidopsis Description

WRKY7Probable WRKY transcription factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STX0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.