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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:
  • cytosol 5
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane, plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plasma membrane: 27800704
plastid: 27992503
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0261100-01
Os02t0462800-01
Os02t0744700-01
Os02t0747400-01
Os03t0245200-01
Os03t0245300-01
Os03t0645100-01
Os04t0287400-01
Os04t0605100-01
Os06t0226700-01
Os06t0229800-01
Os07t0484900-01
Os08t0235800-00
Os08t0428800-00
Os09t0402100-01
Os10t0148100-01
Os10t0148700-01
Os10t0149000-00
Os10t0149100-00
Os10t0149200-01
Os10t0149400-00
Os10t0149800-00
Os10t0150000-01
Os10t0150300-01
Os10t0150400-01
Os10t0150600-01
Os10t0150700-01
Os10t0150800-01
Os10t0437600-00
Os12t0286600-01
Os12t0502300-01
Os12t0616900-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G28900.1 Os08t0428800-00 AT1G14900.1 21798944
AT5G28900.1 Os09t0402100-01 AT1G14900.1 21798944
AT5G28900.1 Os12t0502300-01 AT1G15570.1 21798944
AT5G28900.1 Os03t0645100-01 AT1G30120.1 21798944
AT5G28900.1 Os12t0616900-01 AT1G30120.1 21798944
AT5G28900.1 Os01t0261100-01 AT1G75400.1 21798944
AT5G28900.1 Os02t0744700-01 AT3G01180.1 21798944
AT5G28900.1 Os06t0229800-01 AT3G01180.1 21798944
AT5G28900.1 Os10t0437600-00 AT3G01180.1 21798944
AT5G28900.1 Os02t0747400-01 AT3G47620.1 21798944
AT5G28900.1 Os06t0226700-01 AT3G47620.1 21798944
AT5G28900.1 Os02t0462800-01 AT4G31550.1 21798944
AT5G28900.1 Os04t0287400-01 AT4G31550.1 21798944
AT5G28900.1 Os04t0605100-01 AT4G31550.1 21798944
AT5G28900.1 Os08t0235800-00 AT4G31550.1 21798944
AT5G28900.1 Os03t0245200-01 AT4G38770.1 21798944
AT5G28900.1 Os03t0245300-01 AT4G38770.1 21798944
AT5G28900.1 Os07t0484900-01 AT4G38770.1 21798944
AT5G28900.1 Os10t0148100-01 AT4G38770.1 21798944
AT5G28900.1 Os10t0148700-01 AT4G38770.1 21798944
AT5G28900.1 Os10t0149000-00 AT4G38770.1 21798944
AT5G28900.1 Os10t0149100-00 AT4G38770.1 21798944
AT5G28900.1 Os10t0149200-01 AT4G38770.1 21798944
AT5G28900.1 Os10t0149400-00 AT4G38770.1 21798944
AT5G28900.1 Os10t0149800-00 AT4G38770.1 21798944
AT5G28900.1 Os10t0150000-01 AT4G38770.1 21798944
AT5G28900.1 Os10t0150300-01 AT4G38770.1 21798944
AT5G28900.1 Os10t0150400-01 AT4G38770.1 21798944
AT5G28900.1 Os10t0150600-01 AT4G38770.1 21798944
AT5G28900.1 Os10t0150700-01 AT4G38770.1 21798944
AT5G28900.1 Os10t0150800-01 AT4G38770.1 21798944
AT5G28900.1 Os12t0286600-01 AT5G14390.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU1Hr1G040980.1 Barley cytosol 93.16 93.16
EER94083 Sorghum cytosol 92.79 92.79
TraesCS1A01G153900.1 Wheat cytosol 92.61 92.61
TraesCS1D01G152300.1 Wheat cytosol 92.42 92.42
TraesCS1B01G171200.1 Wheat cytosol 92.24 92.24
KRG92395 Soybean cytosol 14.42 91.76
Zm00001d032708_P009 Maize cytosol 90.94 91.11
GSMUA_Achr8P19010_001 Banana cytosol 54.53 89.94
KRG97049 Soybean cytosol 53.6 85.55
Zm00001d014037_P004 Maize cytosol 90.76 85.54
KRG92392 Soybean cytosol 18.48 85.47
KRG92396 Soybean cytosol 11.65 81.82
GSMUA_AchrUn_... Banana cytosol 81.89 81.73
CDY71370 Canola extracellular 36.23 81.67
GSMUA_Achr11P... Banana cytosol 81.33 81.33
KRH62662 Soybean cytosol 7.95 81.13
KRH68797 Soybean cytosol 77.08 77.65
VIT_07s0005g03730.t01 Wine grape cytosol 77.63 76.78
KRH34156 Soybean cytosol 76.16 76.72
KRG92626 Soybean cytosol 75.97 76.54
Solyc04g010070.2.1 Tomato plastid 75.23 75.51
Solyc05g054980.2.1 Tomato cytosol 74.12 74.4
CDY48668 Canola cytosol 73.94 74.35
CDX86212 Canola cytosol 73.94 74.35
Bra010012.1-P Field mustard cytosol 73.94 74.35
KRH34399 Soybean cytosol 73.57 73.57
AT5G28850.2 Thale cress cytosol 72.64 73.32
AT5G28900.1 Thale cress cytosol 72.64 73.32
CDY57012 Canola cytosol 71.9 72.44
Bra036126.1-P Field mustard cytosol 71.9 72.44
AT1G54450.1 Thale cress cytosol 71.53 72.34
Bra021340.1-P Field mustard cytosol 71.35 71.48
CDY44814 Canola cytosol 71.35 71.48
CDY00020 Canola cytosol 71.35 71.35
AT1G03960.1 Thale cress cytosol 68.39 69.94
CDY13127 Canola cytosol 68.76 69.92
Bra027527.1-P Field mustard cytosol 68.39 69.42
CDY36971 Canola cytosol 67.47 68.87
CDX86655 Canola cytosol 66.73 68.5
Bra030551.1-P Field mustard cytosol 67.47 68.1
CDY15483 Canola cytosol 67.1 67.98
Os02t0191700-00 Rice plasma membrane 66.54 65.22
KRG97048 Soybean nucleus 23.29 63.96
AT5G44090.2 Thale cress endoplasmic reticulum, extracellular 66.17 62.48
VIT_14s0036g00750.t01 Wine grape cytosol 57.3 59.73
KRG92401 Soybean cytosol, plastid 17.38 59.49
VIT_14s0036g00730.t01 Wine grape extracellular 20.15 59.24
KRG92399 Soybean cytosol 2.96 48.48
Protein Annotations
Gene3D:1.10.238.10Gene3D:1.10.238.220Gene3D:1.10.238.230MapMan:18.4.24.1.2.4EntrezGene:4348893ProteinID:AAP54271.2
EMBL:AK067811EMBL:AK101394ProteinID:BAF26764.1ProteinID:BAT11299.1ProteinID:EEE51135.1InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BSInterPro:EF_hand_domGO:GO:0003674GO:GO:0005488GO:GO:0005509InterPro:IPR002048
EnsemblPlantsGene:Os10g0476600EnsemblPlants:Os10t0476600-01PFAM:PF13499ScanProsite:PS00018PFscan:PS50222PANTHER:PTHR14095
PANTHER:PTHR14095:SF7UniProt:Q7XDE0SUPFAM:SSF47473UniParc:UPI0000DB3F60RefSeq:XP_015614611.1SEG:seg
Description
PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B''Similar to Protein phosphatase 2A 62 kDa B'' regulatory subunit (Protein phosphatase 2A 62 kDa B regulatory subunit) (Protein phosphatase 2A alpha). (Os10t0476600-01);Similar to Protein phosphatase 2A 62 kDa B'' regulatory subunit (Protein phosphatase 2A 62 kDa B regulatory subunit) (Protein phosphatase 2A alpha). (Os10t0476600-02)
Coordinates
chr10:+:17755806..17763645
Molecular Weight (calculated)
61908.3 Da
IEP (calculated)
4.562
GRAVY (calculated)
-0.369
Length
541 amino acids
Sequence
(BLAST)
001: MEVEAARRDA ATLDPELLQL PELSPGALRE NPALAEALYS QWLALPETSK LVNSLIEDAK AGATLNVTGS SASTNAASSG SLPSMFPAGS APPLSPRSTS
101: GSPRVMRRGS GAGPSSLGSP LKVVSEPVRE VIPQFYFKYG RPAPKDLKEQ CLSRIDHLFF AGEGLQIQEF RSVTKDICKL PSFFSSVLFK KIDAAGSGTV
201: TRDAFVDYWI NDNKITMDTA SQIFEILRKP DYNYLTQEDF KPVLKELLAT HPGLEFLQGT PEFQERYAET VIYRIFYSIN RAGNGHLTLR ELKRGNLIAA
301: MQQLDEEEDI NKVLRYFSYE HFYVIYCKFW ELDTDHDFLI DKENLIRYGN HSLTYRIVDR IFSQVPRKFT SMTEGKMGYE DFVYFILSEE DKSSEPSLEY
401: WFKCIDLDGN GILTTTEMQF FYEEQLHRME CMAQEPVLFE DILCQMIDMI GPENECYFTL RDLKRCKLSG NIFNILFNLN KFMAFETRDP FLIRQERENP
501: TLTEWDRFAH REYIRLSMEE DGEDASNGSG DVWDESLEAP F
Best Arabidopsis Sequence Match ( AT5G28900.1 )
(BLAST)
001: MVDTVIPGDM ACLDADLLQL QEMSSFVLNS KPGFTQKLFD QWLSLPEAQR QVGSLLKDAV AGAPINVTGS ASGSNSATIP SMFPAGSAPP LSPRSCGSPR
101: TTKQRAPSNL GSTLKVVNEP VKEPIPQFYF QNGRPPPSEI KEQCMFRINH FFYGHMDGLQ IQEFKLVTRE ICKLPSFFST SLFRKIDLNN TGFVTRDAFI
201: DFWVNGNMLI MDTTTQIFKI LKQKDQSFIV KDDFKPLLKE LLATHPGLEF LQSTPEFQER YAETVTYRIF YYINRSGNGR ITFRELKRGN LIDAMLHADE
301: EEDINKVLRY FSYEHFYVIY CKFWELDTDH DFLIDKENLM RYGNHALTYR IVDRIFSQVA RKFTNKVEGK MGYEDFVYFI LAEEDKSSVP SLEYWFKCID
401: LDANGIITRN EMQFFYEEQL HRMECMAQEA VLFEDILCQM IDMIGPENES HITLHDLKGS KLSGNVFNIL FNLNKFMAFE TRDPFLIRQE RENPTLTDWD
501: RFAHREYIRL SMEEDVEDAS NGSAEVWDES SLEAPF
Arabidopsis Description
B''GAMMAProbable serine/threonine protein phosphatase 2A regulatory subunit B''gamma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZQ4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.