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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra030551.1-P Field mustard cytosol 87.52 86.38
CDX86655 Canola cytosol 86.01 86.34
CDY15483 Canola cytosol 86.58 85.77
GSMUA_Achr8P19010_001 Banana cytosol 48.2 77.74
AT5G44090.2 Thale cress endoplasmic reticulum, extracellular 79.21 73.12
VIT_07s0005g03730.t01 Wine grape cytosol 73.16 70.75
Zm00001d032708_P009 Maize cytosol 71.64 70.19
KRH62662 Soybean cytosol 6.99 69.81
EER94083 Sorghum cytosol 71.27 69.69
HORVU1Hr1G040980.1 Barley cytosol 70.13 68.58
Os10t0476600-01 Rice cytosol, plasma membrane, plastid 69.94 68.39
TraesCS1A01G153900.1 Wheat cytosol 69.94 68.39
TraesCS1B01G171200.1 Wheat cytosol 69.94 68.39
GSMUA_AchrUn_... Banana cytosol 69.94 68.27
TraesCS1D01G152300.1 Wheat cytosol 69.75 68.21
GSMUA_Achr11P... Banana cytosol 69.57 68.02
AT5G28900.1 Thale cress cytosol 67.11 66.23
AT5G28850.2 Thale cress cytosol 67.11 66.23
Zm00001d014037_P004 Maize cytosol 70.7 65.16
AT1G54450.1 Thale cress cytosol 65.22 64.49
AT5G18580.1 Thale cress nucleus 18.53 20.42
Protein Annotations
Gene3D:1.10.238.10Gene3D:1.10.238.220Gene3D:1.10.238.230MapMan:18.4.24.1.2.4EntrezGene:839361UniProt:A0A178W4Q4
ProteinID:AAD10674.1ProteinID:AEE27638.1ProteinID:AEE27639.1ProteinID:ANM57805.1ProteinID:ANM57807.1ProteinID:ANM57808.1
ArrayExpress:AT1G03960EnsemblPlantsGene:AT1G03960RefSeq:AT1G03960TAIR:AT1G03960RefSeq:AT1G03960-TAIR-GEnsemblPlants:AT1G03960.1
TAIR:AT1G03960.1Unigene:At.42504EMBL:BT004045EMBL:BT004945InterPro:EF-hand-dom_pairInterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_domGO:GO:0003674GO:GO:0005488GO:GO:0005509GO:GO:0008150GO:GO:0046872
InterPro:IPR002048RefSeq:NP_001320288.1RefSeq:NP_001320290.1RefSeq:NP_001320291.1RefSeq:NP_171892.2RefSeq:NP_973757.1
ProteinID:OAP13238.1PFAM:PF13499PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293
PO:PO:0001017PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025281ScanProsite:PS00018PFscan:PS50222PANTHER:PTHR14095
PANTHER:PTHR14095:SF7UniProt:Q84JI6SUPFAM:SSF47473UniParc:UPI000000C24ESEG:seg:
Description
B''EPSILONProbable serine/threonine protein phosphatase 2A regulatory subunit B''epsilon [Source:UniProtKB/Swiss-Prot;Acc:Q84JI6]
Coordinates
chr1:+:1013652..1017957
Molecular Weight (calculated)
61241.7 Da
IEP (calculated)
4.584
GRAVY (calculated)
-0.388
Length
529 amino acids
Sequence
(BLAST)
001: MDIDGVDDDL HILDPELLQL PGLSPSPLKP TSLIADDLFS QWLSLPETAT LVKSLIDDAK SGTPTNKSKN LPSVFLSSST PPLSPRSSSG SPRFSRQRTS
101: PPSLHSPLRS LKEPKRQLIP QFYYQHGRPP AKELKEQCLS MVDQVFSNYI DGLHVDEFKS ITKQVCKLPS FLSPALFRKI DPNCTDIVTR DAFIKYWIDG
201: NMLTMDTASQ IYNILRQQGC SYLRQADFKP VLDELLATHP GLEFLRTISE FQERYAETVI YRIFYYINRS GTGCLTLREL RRGNLIAAMQ QLDEEDDINK
301: IIRYFSYEHF YVIYCKFWEL DGDHDCFIDK DNLIKYGNNA LTYRIVDRIF SQIPRKFTSK VEGKMSYEDF VYFILAEEDK SSEPSLEYWF KCVDLDGNGV
401: ITSNEMQFFF EEQLHRMECI TQEAVLFSDI LCQIIDMIGP EKENCITLQD LKGSKLSANV FNILFNLNKF MAFETRDPFL IRQEREDPNL TEWDRFAQRE
501: YARLSMEEDV DEVSNGSADV WDEPLEPPF
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.