CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044171_P001	Maize	nucleus	68.28	81.74
Zm00001d011403_P001	Maize	nucleus	65.62	77.65
TraesCS3B01G255400.1	Wheat	nucleus	49.64	64.26
TraesCS3D01G227400.1	Wheat	nucleus	49.64	64.06
TraesCS3A01G229300.1	Wheat	nucleus	48.91	63.92
Os01t0624700-01	Rice	nucleus	51.57	61.21
HORVU3Hr1G055910.5	Barley	plastid	53.51	50.0
KXG22622	Sorghum	nucleus	37.29	42.31
GSMUA_Achr5P09430_001	Banana	nucleus	24.46	29.71
GSMUA_Achr9P05460_001	Banana	nucleus	26.15	29.67
EES04883	Sorghum	nucleus	26.88	29.6
EER89819	Sorghum	nucleus	22.52	26.57
GSMUA_Achr6P31840_001	Banana	nucleus	24.21	25.97
GSMUA_Achr1P05010_001	Banana	nucleus	22.03	24.66
KXG37092	Sorghum	nucleus	22.52	23.72
EES03563	Sorghum	plastid	17.43	22.57
EES03611	Sorghum	nucleus	16.22	21.61
OQU92055	Sorghum	nucleus	21.31	20.61
EES14755	Sorghum	nucleus	15.25	19.81
KXG27029	Sorghum	nucleus	23.73	19.41
EES11384	Sorghum	nucleus	14.77	19.37
EES07413	Sorghum	nucleus	23.24	19.32
CDY72268	Canola	cytosol, plastid	4.6	18.45
OQU84894	Sorghum	nucleus	13.08	18.06
EER91209	Sorghum	nucleus	13.56	15.91
EES17321	Sorghum	nucleus	13.8	15.36
EER93478	Sorghum	nucleus	13.32	13.55
KXG37354	Sorghum	nucleus	13.08	12.44

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8084855	UniProt:C5XEC4	EnsemblPlants:EES03310	ProteinID:EES03310
ProteinID:EES03310.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR32096	PANTHER:PTHR32096:SF23
SMART:SM00774	EnsemblPlantsGene:SORBI_3003G226600	SUPFAM:SSF118290	UniParc:UPI0001A85078	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
RefSeq:XP_002458190.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:56293002..56295461

Molecular Weight (calculated)

44225.4 Da

IEP (calculated)

8.560

GRAVY (calculated)

-0.569

Length

413 amino acids

Sequence
(BLAST)

001: MRACGGRALL DCQCQKSTHP FLLLQSPAYG QERSSTHASP LCSSKAPARR ARSWFMRGVL LRMAEHFNDW DLQAVVRSCG SVAAHPDPAA PRAEPDAAPP
101: EPTTTTPVAA PPERPPGARA TPPTPVAVPV PVPVRGQEQR APPPVAAKAA ALLYDLEYLD LDHKPFLMPV VAPSPRAGDN GRGEREVMIS FPAGAASTSG
201: MQQRASPPGR KPGARTPRPK RSKKSQLKKV VREMPVADGG SSSSDPWAWR KYGQKPIKGS PYPRGYYKCS SMKGCMARKL VERSPAKPGV LIVTYMAEHC
301: HPVPTQLNAL AGTTRHKTSS SGAASSPKSH EQGQAVEKAA GRGAGDREHG NNETSSSMAG EFGGEEIAVA IDDDEFWPAG MDLDELLAPV DDDFDFEHVV
401: EEEDGVLGRR LSL

Best Arabidopsis Sequence Match ( AT4G23550.1 )
(BLAST)

001: MGEVAYMDEG DLEAIVRGYS GSGDAFSGES SGTFSPSFCL PMETSSFYEP EMETSGLDEL GELYKPFYPF STQTILTSSV SLPEDSKPFR DDKKQRSHGC
101: LLSNGSRADH IRISESKSKK SKKNQQKRVV EQVKEENLLS DAWAWRKYGQ KPIKGSPYPR SYYRCSSSKG CLARKQVERN PQNPEKFTIT YTNEHNHELP
201: TRRNSLAGST RAKTSQPKPT LTKKSEKEVV SSPTSNPMIP SADESSVAVQ EMSVAETSTH QAAGAIEGRR LSNGLPSDLM SGSGTFPSFT GDFDELLNSQ
301: EFFSGYLWNY

Arabidopsis Description

WRKY29WRKY29 [Source:UniProtKB/TrEMBL;Acc:A0A178V2E9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.