Factsheet for TraesCS7B01G006600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G251400.1
TraesCS6B01G273900.1
TraesCS6D01G233200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16250.1	TraesCS6A01G251400.1	AT3G48150.1	21798944
AT3G16250.1	TraesCS6B01G273900.1	AT3G48150.1	21798944
AT3G16250.1	TraesCS6D01G233200.1	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G103500.1	Wheat	plastid	70.92	73.16
HORVU7Hr1G023140.1	Barley	plastid	71.94	71.57
TraesCS7A01G108600.1	Wheat	plastid	69.9	70.26
Zm00001d021515_P001	Maize	plastid	63.78	65.44
EER97233	Sorghum	plastid	60.2	60.51
Os07t0489800-01	Rice	plastid	63.78	59.52
Zm00001d006398_P001	Maize	plastid	59.18	58.29
GSMUA_Achr11P...	Banana	plastid	53.57	55.85
CDY30147	Canola	mitochondrion	22.45	44.0
Solyc08g083360.2.1	Tomato	nucleus	40.82	41.67
CDY63822	Canola	cytosol	23.98	40.87
PGSC0003DMT400031868	Potato	plastid	41.33	40.3
CDX97734	Canola	plastid	40.31	38.73
Bra021172.1-P	Field mustard	plastid	39.8	38.24
Bra027180.1-P	Field mustard	plastid	39.8	38.24
KRH09910	Soybean	plastid	36.73	37.11
CDY20191	Canola	plastid	38.27	36.76
VIT_09s0002g04010.t01	Wine grape	plastid	35.71	36.65
AT3G16250.1	Thale cress	plastid	37.76	36.27
KRH23421	Soybean	mitochondrion, plastid	34.18	34.54
TraesCS1B01G409300.1	Wheat	plastid	25.51	25.91
CDY30148	Canola	plastid	18.88	25.87

Protein Annotations

EnsemblPlants:TraesCS7B01G006600.1	EnsemblPlantsGene:TraesCS7B01G006600	Gene3D:3.10.20.30	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0009055	GO:GO:0051536	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:Beta-grasp_dom_sf	InterPro:IPR001041
InterPro:IPR012675	PANTHER:PTHR23426	PANTHER:PTHR23426:SF27	PFAM:PF00111	SEG:seg	SignalP:SignalP-noTM
SUPFAM:SSF54292	TIGR:cd00207	MapMan:1.1.8.1.3.3	:	:	:

Description

No Description!

Coordinates

chr7B:-:3700539..3701681

Molecular Weight (calculated)

21468.6 Da

IEP (calculated)

8.136

GRAVY (calculated)

-0.564

Length

196 amino acids

Sequence
(BLAST)

001: MAATLQFISL LGTSSAHHPA PSCSSSNEKQ HRSVHLPQQQ QGRRKSGRSL RAVRAVETGA EPATADSETT VEPPSVDFAF VSPRLLPDGT PDVHYRTACG
101: GQKLRDIMLQ GYIDLYGPYD KLLLNCSGGG ECGTCIVEVV EGGEMLSPKN EVEKEKLKRK PKSWRLACQA TVGNPDSTGQ MVIQQLPEWK VHKWEK

Best Arabidopsis Sequence Match ( AT3G16250.1 )
(BLAST)

001: MGSVQLSGSG LVASLPPNHS FSHKTKLNKP NSYFFRSKHN AARTKTVRAI STAPASQPPA ADEPDEPPAV DFAFVHSVLL PDGTPDVHWR RANGGQKLRD
101: IMLDSNIELY GPYSKPLSNC AGVGTCATCM VEIVNGKELL NPRTDIEKEK LKRKPKNWRL ACQTNVGNPD STGLVVIQQL PEWKAHEWNI PKNIPNDDDL
201: ETST

Arabidopsis Description

PNSB3Photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.