CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24006
KRH27971
KRH29310
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16250.1	KRH24006	AT3G48150.1	21798944
AT3G16250.1	KRH27971	AT3G48150.1	21798944
AT3G16250.1	KRH29310	AT3G48150.1	21798944
AT3G16250.1	KRH77487	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23421	Soybean	mitochondrion, plastid	83.51	83.51
CDY63822	Canola	cytosol	38.66	65.22
VIT_09s0002g04010.t01	Wine grape	plastid	60.31	61.26
Bra021172.1-P	Field mustard	plastid	55.67	52.94
CDY20191	Canola	plastid	54.64	51.96
AT3G16250.1	Thale cress	plastid	54.64	51.96
Bra027180.1-P	Field mustard	plastid	54.12	51.47
CDX97734	Canola	plastid	54.12	51.47
CDY30147	Canola	mitochondrion	26.29	51.0
CDY30148	Canola	plastid	30.41	41.26
GSMUA_Achr11P...	Banana	plastid	38.14	39.36
TraesCS7D01G103500.1	Wheat	plastid	37.63	38.42
Zm00001d021515_P001	Maize	plastid	37.63	38.22
HORVU7Hr1G023140.1	Barley	plastid	38.66	38.07
EER97233	Sorghum	plastid	37.11	36.92
TraesCS7B01G006600.1	Wheat	plastid	37.11	36.73
TraesCS7A01G108600.1	Wheat	plastid	35.57	35.38
KRH16041	Soybean	plastid	26.8	35.14
Os07t0489800-01	Rice	plastid	37.63	34.76
KRH05069	Soybean	plastid	27.84	33.54
PGSC0003DMT400031868	Potato	plastid	34.54	33.33
Solyc08g083360.2.1	Tomato	nucleus	31.96	32.29
Zm00001d006398_P001	Maize	plastid	32.99	32.16

Protein Annotations

MapMan:1.1.8.1.3.3	EntrezGene:100820264	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	EMBL:ACUP02009113
InterPro:Beta-grasp_dom_sf	EnsemblPlantsGene:GLYMA_15G018000	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0022900	GO:GO:0051536
UniProt:I1MCT0	InterPro:IPR001041	InterPro:IPR012675	EnsemblPlants:KRH09910	ProteinID:KRH09910	ProteinID:KRH09910.1
PFAM:PF00111	PANTHER:PTHR23426	PANTHER:PTHR23426:SF27	SUPFAM:SSF54292	UniParc:UPI000233B00B	SEG:seg

Description

hypothetical protein

Coordinates

chr15:+:1389067..1391185

Molecular Weight (calculated)

21620.8 Da

IEP (calculated)

8.715

GRAVY (calculated)

-0.579

Length

194 amino acids

Sequence
(BLAST)

001: MSLLQLQLSS HALRSITSSS HNFRPTYSSK RVSYVRTRIR AVGTVPEKDS DSDTTDPDEP PYVGLVFVSS VLLPDGTPDM HFRSACGGQR LRKIMLDSNV
101: ELYGPYARPL LNCGGGGTCG TCMVEVLEGK ELLNPRTDKE KEILKKKPKN WRLACQTIVG KPDSRGAVVI QQLPEWKGHE WKYAKPGESN WESD

Best Arabidopsis Sequence Match ( AT3G16250.1 )
(BLAST)

001: MGSVQLSGSG LVASLPPNHS FSHKTKLNKP NSYFFRSKHN AARTKTVRAI STAPASQPPA ADEPDEPPAV DFAFVHSVLL PDGTPDVHWR RANGGQKLRD
101: IMLDSNIELY GPYSKPLSNC AGVGTCATCM VEIVNGKELL NPRTDIEKEK LKRKPKNWRL ACQTNVGNPD STGLVVIQQL PEWKAHEWNI PKNIPNDDDL
201: ETST

Arabidopsis Description

PNSB3Photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.