Factsheet for TraesCS6A01G130900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G120800.1	Wheat	plastid	99.1	99.1
TraesCS6B01G159200.1	Wheat	plastid	98.81	98.81
HORVU6Hr1G025120.1	Barley	cytosol	15.52	96.3
HORVU6Hr1G025110.1	Barley	plastid	74.48	93.45
OQU84405	Sorghum	plastid	88.21	87.82
Zm00001d053861_P005	Maize	plastid	88.06	87.8
GSMUA_Achr3P07220_001	Banana	cytosol, nucleus, plastid	73.28	87.06
VIT_07s0031g03050.t01	Wine grape	plastid	79.7	78.53
CDY44781	Canola	plastid	77.01	76.44
KRH53996	Soybean	plasma membrane	78.21	76.27
Solyc04g015450.2.1	Tomato	nucleus	77.46	76.21
PGSC0003DMT400070154	Potato	plastid	77.46	76.1
AT5G08650.1	Thale cress	plastid	77.16	75.92
CDY40739	Canola	plastid	77.01	75.44
Bra028651.1-P	Field mustard	plastid	76.87	75.29
KRH63332	Soybean	cytosol	30.3	74.91
KRH63943	Soybean	plastid	77.46	69.2
KRH63330	Soybean	cytosol, plasma membrane	27.76	69.14
TraesCS7A01G087200.1	Wheat	mitochondrion	46.57	46.85
TraesCS4A01G386100.3	Wheat	mitochondrion	46.57	46.85
TraesCS3A01G291600.1	Wheat	mitochondrion	23.28	23.18
TraesCS6A01G192800.1	Wheat	plastid	21.79	21.66
TraesCS6A01G189500.1	Wheat	cytosol, nucleus, plastid	3.28	17.6
TraesCS2A01G234500.1	Wheat	cytosol	3.28	17.6
TraesCS7A01G288600.1	Wheat	cytosol	3.13	17.21
TraesCS7A01G336600.4	Wheat	mitochondrion	18.96	16.28
TraesCS2A01G387000.1	Wheat	mitochondrion, plastid	17.76	15.49
TraesCS3A01G232300.1	Wheat	cytosol, golgi	18.96	15.07
TraesCS4A01G363800.1	Wheat	cytosol, nucleus, plastid	18.81	14.95
TraesCS4A01G363700.1	Wheat	cytosol, golgi, unclear	18.81	14.95
TraesCS7A01G461100.1	Wheat	cytosol, nucleus, unclear	18.81	14.95
TraesCS1A01G027600.1	Wheat	cytosol	16.72	13.25
TraesCS5A01G370800.1	Wheat	cytosol	18.66	11.96
TraesCS1A01G048300.1	Wheat	mitochondrion, nucleus, plastid	16.72	11.31
TraesCS7A01G380300.1	Wheat	nucleus	16.12	10.87
TraesCS4A01G363900.1	Wheat	plastid	10.0	10.2

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.30.70.2570	Gene3D:3.30.70.3380	Gene3D:3.30.70.870	Gene3D:3.40.50.300	MapMan:35.1
InterPro:EF-4	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:GUFP
InterPro:G_TR_CS	InterPro:IPR000795	InterPro:IPR038363	InterPro:LepA_CTD	InterPro:LepA_C_sf	InterPro:LepA_IV
HAMAP:MF_00071	HAMAP:MF_03138	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144
PFAM:PF06421	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43512	PANTHER:PTHR43512:SF1
SMART:SM00838	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom
TIGRFAMs:TIGR00231	TIGRFAMs:TIGR01393	EnsemblPlantsGene:TraesCS6A01G130900	EnsemblPlants:TraesCS6A01G130900.1	InterPro:Transl_B-barrel_sf	TIGR:cd01890
TIGR:cd03699	TIGR:cd03709	TIGR:cd16260	SEG:seg	:	:

Description

No Description!

Coordinates

chr6A:-:102997841..103007167

Molecular Weight (calculated)

74038.9 Da

IEP (calculated)

6.840

GRAVY (calculated)

-0.131

Length

670 amino acids

Sequence
(BLAST)

001: MATTSAVCRL AVLPPSPSPL ASGLRRPAAP FSAASRPRAL SAASRGRVLC LAASAPASST DAGQDRLQKV PITNIRNFCI IAHIDHGKST LADKLLEMTG
101: TVQKRDMKQQ FLDNMDLERE RGITIKLQAA RMRYVMNNEP YCLNLIDTPG HVDFSYEVSR SLAACEGALL VVDASQGVEA QTLANVYLAL ESNLEIIPVL
201: NKIDLPGAEP DRIAQEIEEI IGLDCSNAIR CSAKEGIGII EILDAIVNKV PPPKDTLKNP LRALIFDSYY DAYRGVIVYF RVIDGSIRKG DKICFMANKK
301: EYVADEIGVL SPNQMEADEL HAGEVGYLSA SIRSVADARV GDTITHFAKR AESALPGYSE ATPMVFCGLF PLEADQFEEL REALGRLQLN DAALKFEPES
401: SSAMGFGFRC GFLGLLHMEI VQERLEREYN LNLIITAPSV VYRVNCSNNE TVECSNPSLL PEPGKQRSIE EPYVKIELLT PKDYIGPIME LGQERRGEFK
501: EMNYITENRA KLTYMLPLAE MVGDFFDQLK SRSKGYASME YSVVGYRVSD LVKLDIQING EPVEALSTIV HKEKAYTVGR ALTQKLKELI PRQMFKIPIQ
601: ACIGAKVIAS EALSAIRKDV LSKCYGGDIS RKKKLLKKQA EGKKRMKAIG RVEVPQEAFM AVLKLEKEVL

Best Arabidopsis Sequence Match ( AT5G08650.1 )
(BLAST)

001: MAMASAMDLS SPPTFFLSGT STSSPSLRRL SSISVSGFRR HSNRKLQILC QATAGTEPQS GLSVSGSKLA ARSGQDRLLK VPISNIRNFS IIAHIDHGKS
101: TLADKLLQVT GTVQNRDMKE QFLDNMDLER ERGITIKLQA ARMRYVYEDT PFCLNLIDTP GHVDFSYEVS RSLAACEGAL LVVDASQGVE AQTLANVYLA
201: LENNLEIIPV LNKIDLPGAE PEKVLREIEE VIGLDCSKAI FCSAKEGIGI TEILDAIVQR IPAPLDTAGK PLRALIFDSY YDPYRGVIVY FRVIDGKVKK
301: GDRIFFMASG KDYFADEVGV LSPNQIQVDE LYAGEVGYIA ASVRSVADAR VGDTITHYSR KAESSLPGYE EATPMVFCGL FPVDADQFPD LRDALEKLQL
401: NDAALKFEPE TSSAMGFGFR CGFLGLLHME IVQERLEREY NLNLITTAPS VVYRVNSVNG DTTLCSNPSR LPDPGQRKSV EEPYVKIELL TPKDYIGALM
501: ELAQERRGEF KEMKYIAENR ASILYELPLA EMVGDFFDQL KSRTKGYASM EYSVIGYRES DLIKLDILIN AEMVEPLSTI VHRDKAYSVG RALTQKLKEL
601: IPRQMFKVPI QACIGSKVIA SEALSAIRKD VLAKCYGGDI SRKKKLLKKQ AAGKKRMKAI GRVDVPQEAF MAVLKLEREV L

Arabidopsis Description

Translation factor GUF1 homolog, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178USI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.