Factsheet for TraesCS1A01G027600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G033500.1	Wheat	cytosol	44.02	92.31
TraesCS1D01G026800.1	Wheat	cytosol	73.49	89.22
TraesCSU01G002600.1	Wheat	cytosol	83.31	81.58
HORVU1Hr1G003960.9	Barley	cytosol	77.99	71.48
CDY49975	Canola	cytosol	30.53	64.66
TraesCS6A01G189500.1	Wheat	cytosol, nucleus, plastid	9.47	64.0
TraesCS2A01G234500.1	Wheat	cytosol	9.35	63.2
TraesCS7A01G288600.1	Wheat	cytosol	9.11	63.11
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	56.45	61.95
GSMUA_Achr10P...	Banana	cytosol	56.45	61.87
TraesCS3A01G232300.1	Wheat	cytosol, golgi	61.3	61.45
TraesCS4A01G363800.1	Wheat	cytosol, nucleus, plastid	61.07	61.21
TraesCS7A01G461100.1	Wheat	cytosol, nucleus, unclear	60.95	61.09
TraesCS4A01G363700.1	Wheat	cytosol, golgi, unclear	60.59	60.74
KRH43759	Soybean	nucleus	60.47	60.62
KRH13696	Soybean	nucleus	60.35	60.5
Solyc08g062920.2.1	Tomato	nucleus, plastid	58.93	60.14
Bra010782.1-P	Field mustard	cytosol	59.41	59.55
VIT_19s0027g00760.t01	Wine grape	cytosol	60.0	59.44
GSMUA_Achr4P01020_001	Banana	cytosol	60.95	59.26
AT1G56070.2	Thale cress	cytosol	58.93	59.07
CDY40423	Canola	cytosol	54.79	58.83
CDX90241	Canola	cytosol, extracellular	54.67	58.41
Bra010781.1-P	Field mustard	cytosol	38.11	58.33
AT3G12915.2	Thale cress	cytosol	53.73	57.61
TraesCS4A01G363900.1	Wheat	plastid	44.5	57.23
CDY70516	Canola	cytosol	34.32	56.97
Bra017279.1-P	Field mustard	cytosol	58.93	56.72
CDY05533	Canola	cytosol	43.55	56.36
CDY32072	Canola	cytosol	43.08	56.26
CDY24982	Canola	endoplasmic reticulum, vacuole	55.62	56.09
KRH13693	Soybean	mitochondrion	53.25	54.41
Bra020542.1-P	Field mustard	cytosol	59.05	52.8
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	26.63	51.37
KRH43761	Soybean	cytosol, nucleus, plastid	11.95	50.5
KRH13692	Soybean	cytosol, mitochondrion	42.6	50.35
CDY49974	Canola	nucleus	4.02	40.0
CDY70526	Canola	nucleus	3.91	38.82
Os05t0467501-00	Rice	cytosol	20.71	38.38
CDY54261	Canola	nucleus	9.23	33.91
TraesCS7A01G380300.1	Wheat	nucleus	29.94	25.45
TraesCS5A01G370800.1	Wheat	cytosol	28.88	23.35
TraesCS1A01G048300.1	Wheat	mitochondrion, nucleus, plastid	26.98	23.03
TraesCS2A01G387000.1	Wheat	mitochondrion, plastid	18.11	19.92
TraesCS3A01G291600.1	Wheat	mitochondrion	15.27	19.17
TraesCS7A01G336600.4	Wheat	mitochondrion	17.16	18.59
TraesCS4A01G386100.3	Wheat	mitochondrion	13.37	16.97
TraesCS7A01G087200.1	Wheat	mitochondrion	13.37	16.97
TraesCS6A01G130900.1	Wheat	plastid	13.25	16.72
TraesCS6A01G192800.1	Wheat	plastid	13.14	16.47

Protein Annotations

MapMan:17.5.2.1	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:IPR000795
InterPro:IPR014721	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF03764
PFAM:PF14492	PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF11	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980
InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS1A01G027600	EnsemblPlants:TraesCS1A01G027600.1	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EFG/EF2_IV	TIGR:cd01681	TIGR:cd16268	SEG:seg	:	:

Description

No Description!

Coordinates

chr1A:+:13082162..13085442

Molecular Weight (calculated)

93532.9 Da

IEP (calculated)

6.961

GRAVY (calculated)

-0.074

Length

845 amino acids

Sequence
(BLAST)

001: MMVGFTAVEL REMMDKQNNI RNVSVIAHMN HGKSTLTKSL VAAAGIIRHE ADVEVPMTDT HADVAEPGRS VRSAGTSLLY EMNKELLKAH KGERDGDKYL
101: INLIDSPGHV DFSSEVTTAL RVTDGAMLVI DAIEGVCVQT EVVLSQALTE MVKPVLCLNK MDKLFSGFQV EDAQPEFTDE QAYQIVNNVI ENVNDLMTAY
201: GGPRFQDVQF YPEKGNVAFS VGLHGWAFTL AGFAKKYAPM FGMTEADMVK KLWGDNFYDH TTKKWTSVDT GSKSCKRGFA FCCQEIKKVI KVCINNQKDE
301: LGRMLQKVGV NLRDDEKDLT GVALVKCVMQ TWLPASTALL EMMICHLPSP LEAQKYRVEN LYEGPLDDKY AEAIKKCDPE GPLMLYVSKM VPASDVGRFF
401: AFGRVFSGRI AAGMKVRVMG PSYVPGMETD LCVESVQRTI IWMGKKQCDV PDVPCGNTVG LIGLDACITK SATLTSEKEV VARPIRAMKL SVCPLMFVTV
501: NCKVPTDVSK LVQGLKRLAM SDPVVLCSQV EPGTYTVAGV GELHLEICLK DLQENFMDGV EVAVSSPPVV SFRETVRKSC DPVEKKFRNN QIRYSLSLVA
601: RPLDEEVVEA IEDGRLGPRT DHAVRSEILA KHGWDKDLGD KIWCFGPDVV GANVIVNRCK VIQNLELAKK VIVAGFEVVA KEGALAKERM HGICFEVHNV
701: NIHADEALRH TTAQLNEMVR TALMESQLAA KPRLLEPTYI VAIQCPKSAL STIYGILHQR NGSVYEEFVR EGTMLHILKA YVPVYDSFGL CKAISTATSK
801: LVTPQCIFGY WSDMCSDPFQ ANAPAGQMVL DIRKRKKMGR PSFQK

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.