Factsheet for AT3G12915.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70526	Canola	nucleus	10.03	92.94
CDY49974	Canola	nucleus	9.64	89.41
CDY49975	Canola	cytosol	44.8	88.47
CDX90241	Canola	cytosol, extracellular	86.55	86.22
CDY70516	Canola	cytosol	55.58	86.05
Bra010782.1-P	Field mustard	cytosol	91.88	85.88
Bra010781.1-P	Field mustard	cytosol	59.9	85.51
AT1G56070.2	Thale cress	cytosol	91.24	85.29
CDY32072	Canola	cytosol	68.78	83.77
Solyc08g062920.2.1	Tomato	nucleus, plastid	87.94	83.7
CDY05533	Canola	cytosol	69.29	83.61
KRH43759	Soybean	nucleus	89.34	83.51
KRH13696	Soybean	nucleus	89.34	83.51
EES01455	Sorghum	cytosol	89.09	83.27
GSMUA_Achr10P...	Banana	cytosol	81.47	83.27
KXG37185	Sorghum	cytosol	88.96	83.16
KXG37183	Sorghum	cytosol	88.96	83.16
Zm00001d012770_P001	Maize	plastid	88.96	83.16
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	81.22	83.12
Zm00001d034776_P001	Maize	cytosol	88.83	83.04
TraesCS3D01G220900.1	Wheat	golgi	88.83	83.04
Zm00001d034771_P002	Maize	cytosol	88.83	83.04
Zm00001d034773_P001	Maize	cytosol	88.83	83.04
TraesCS3B01G261500.1	Wheat	cytosol	88.71	82.92
Bra017279.1-P	Field mustard	cytosol	92.26	82.8
TraesCS3A01G232300.1	Wheat	cytosol, golgi	88.58	82.8
TraesCS5D01G509800.1	Wheat	cytosol	46.95	82.77
VIT_19s0027g00760.t01	Wine grape	cytosol	89.34	82.53
TraesCS4A01G363800.1	Wheat	cytosol, nucleus, plastid	88.2	82.44
HORVU3Hr1G057880.1	Barley	cytosol	88.2	82.44
HORVU3Hr1G057890.1	Barley	cytosol	88.2	82.44
TraesCS5D01G509600.1	Wheat	cytosol	88.2	82.44
TraesCS5B01G509500.1	Wheat	cytosol, golgi, nucleus	88.07	82.33
HORVU5Hr1G116580.1	Barley	cytosol, plasma membrane	88.07	82.33
TraesCS5D01G509700.1	Wheat	cytosol	86.17	82.3
CDY24982	Canola	endoplasmic reticulum, vacuole	87.44	82.22
TraesCS5B01G509600.1	Wheat	cytosol, golgi	87.94	82.21
TraesCS7D01G449300.1	Wheat	cytosol	87.82	82.09
TraesCS7A01G461100.1	Wheat	cytosol, nucleus, unclear	87.69	81.97
TraesCS7B01G362600.1	Wheat	cytosol	87.69	81.97
HORVU7Hr1G106150.1	Barley	cytosol	87.69	81.97
TraesCS5B01G509700.1	Wheat	cytosol, golgi	87.56	81.85
TraesCS4A01G363700.1	Wheat	cytosol, golgi, unclear	87.44	81.73
OQU75622	Sorghum	cytosol	35.15	81.71
CDY40423	Canola	cytosol	81.47	81.58
GSMUA_Achr4P01020_001	Banana	cytosol	88.71	80.44
Os01t0742200-01	Rice	cytosol, nucleus	83.63	79.78
HORVU5Hr1G116710.1	Barley	cytosol	57.87	77.68
TraesCS4A01G363900.1	Wheat	plastid	63.96	76.71
Bra020542.1-P	Field mustard	cytosol	91.88	76.61
KRH13693	Soybean	mitochondrion	73.86	70.37
Zm00001d020342_P001	Maize	mitochondrion	34.52	68.17
KRH13692	Soybean	cytosol, mitochondrion	61.04	67.27
KRH43761	Soybean	cytosol, nucleus, plastid	17.01	67.0
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	36.17	65.07
CDY54261	Canola	nucleus	18.91	64.78
TraesCS2A01G234500.1	Wheat	cytosol	9.39	59.2
TraesCS6A01G189500.1	Wheat	cytosol, nucleus, plastid	9.39	59.2
TraesCS7A01G288600.1	Wheat	cytosol	9.14	59.02
TraesCS1D01G023700.1	Wheat	cytosol	59.64	55.89
TraesCS1A01G027600.1	Wheat	cytosol	57.61	53.73
TraesCS1D01G026800.1	Wheat	cytosol	46.7	52.87
TraesCSU01G002600.1	Wheat	cytosol	57.61	52.61
TraesCS1B01G033500.1	Wheat	cytosol	24.49	47.89
HORVU1Hr1G003960.9	Barley	cytosol	55.71	47.61
Os05t0467501-00	Rice	cytosol	26.4	45.61
AT5G25230.1	Thale cress	cytosol	37.31	30.22
AT1G06220.2	Thale cress	cytosol	37.82	30.19
AT3G22980.2	Thale cress	cytosol	35.41	27.49
AT1G62750.1	Thale cress	plastid	21.57	21.71
AT2G45030.1	Thale cress	mitochondrion	19.8	20.69
AT1G45332.1	Thale cress	mitochondrion	19.8	20.69
AT2G31060.3	Thale cress	mitochondrion	16.5	19.37
AT5G39900.1	Thale cress	mitochondrion	15.48	18.4
AT5G13650.2	Thale cress	plastid	15.61	18.2
AT5G08650.1	Thale cress	plastid	15.23	17.62

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300	MapMan:35.1
EntrezGene:3768815	ProteinID:AEE75261.2	ArrayExpress:AT3G12915	EnsemblPlantsGene:AT3G12915	RefSeq:AT3G12915	TAIR:AT3G12915
RefSeq:AT3G12915-TAIR-G	EnsemblPlants:AT3G12915.2	TAIR:AT3G12915.2	Unigene:At.74672	InterPro:EFG_III/V	InterPro:EFG_V-like
InterPro:EFTu-like_2	UniProt:F4JB06	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0006414
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	InterPro:IPR014721	RefSeq:NP_001319534.1	InterPro:P-loop_NTPase
PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF03764	PFAM:PF14492	PO:PO:0000293
PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF11	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211
SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV
UniParc:UPI0008487C35	:	:	:	:	:

Description

Ribosomal protein S5/Elongation factor G/III/V family protein [Source:UniProtKB/TrEMBL;Acc:F4JB06]

Coordinates

chr3:+:4112834..4115951

Molecular Weight (calculated)

87835.0 Da

IEP (calculated)

5.727

GRAVY (calculated)

-0.244

Length

788 amino acids

Sequence
(BLAST)

001: MVKFTVEEQR KITDRKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQET AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDASLKSFT GARDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQSLGER IRPVLTVNKM DRCFLELKVD GEEAYQNFQR VIENANVIMA THEDPLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVSESKM MERLWGENFF DSATRKWTTK NWLPDLQAWK DKLWPMLEKL GIQMKPDEKE LMGKPLMKRV
301: MQAWLPASTA LLEMMIFHLP SPYTAQRYRV ENLYEGPLDD KYAAAIRNCD PDGPLMLYVS KMIPASDKGR FFAFGRVFSG TVSTGMKVRI MGPNYVPGEK
401: KDLYVKSVQR TVIWMGKKQE TVEDVPCGNT VAMVGLDQFI TKNASDLPKL VEGLKRLAKS DPMVLCTMEE SGEHIVAGAG ELHIEICVKD LQDFMGGADI
501: IVSDPVVSLR ETVFERSCRT VMSKSPNKHN RLYMEARPME DGLAEAIDEG RIGPSDDPKI RSKILAEEFG WDKDLAKKIW AFGPDTTGPN MVVDMCKGVQ
601: YLNEIKDSVV AGFQWASKEG PLAEENMRGV CYEVCDVVLH ADAIHRGCGQ MISTARRAIY ASQLTAKPRL LEPVYMVEIQ APEGALGGIY SVLNQKRGHV
701: FEEMQRPGTP LYNIKAYLPV VESFGFSGQL RAATSGQAFP QCVFDHWDMM SSDPLETGSQ AATLVADIRK RKGLKLQMTP LSDYEDKL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.