Factsheet for Zm00001d034773_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034776_P001	Maize	cytosol	100.0	100.0
Zm00001d012770_P001	Maize	plastid	99.76	99.76
Zm00001d034771_P002	Maize	cytosol	99.53	99.53
KXG37183	Sorghum	cytosol	99.17	99.17
KXG37185	Sorghum	cytosol	99.17	99.17
OQU75622	Sorghum	cytosol	39.62	98.53
GSMUA_Achr10P...	Banana	cytosol	86.71	94.81
KRH43759	Soybean	nucleus	93.24	93.24
KRH13696	Soybean	nucleus	93.12	93.12
CDY49975	Canola	cytosol	44.01	92.98
Solyc08g062920.2.1	Tomato	nucleus, plastid	91.22	92.87
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	84.7	92.73
CDX90241	Canola	cytosol, extracellular	86.6	92.29
VIT_19s0027g00760.t01	Wine grape	cytosol	93.36	92.26
Bra010782.1-P	Field mustard	cytosol	92.17	92.17
AT1G56070.2	Thale cress	cytosol	91.7	91.7
CDY05533	Canola	cytosol	70.94	91.58
CDY70516	Canola	cytosol	55.16	91.36
CDY32072	Canola	cytosol	69.99	91.19
GSMUA_Achr4P01020_001	Banana	cytosol	93.95	91.14
Bra010781.1-P	Field mustard	cytosol	59.67	91.12
Os01t0742200-01	Rice	cytosol, nucleus	88.73	90.56
CDY49974	Canola	nucleus	9.02	89.41
AT3G12915.2	Thale cress	cytosol	83.04	88.83
CDY24982	Canola	endoplasmic reticulum, vacuole	87.9	88.42
CDY70526	Canola	nucleus	8.9	88.24
CDY40423	Canola	cytosol	82.33	88.18
Bra017279.1-P	Field mustard	cytosol	91.81	88.15
Bra020542.1-P	Field mustard	cytosol	91.93	82.01
KRH43761	Soybean	cytosol, nucleus, plastid	18.27	77.0
KRH13693	Soybean	mitochondrion	75.21	76.66
Zm00001d020342_P001	Maize	mitochondrion	36.18	76.44
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	39.62	76.26
KRH13692	Soybean	cytosol, mitochondrion	60.62	71.47
CDY54261	Canola	nucleus	17.91	65.65
Zm00001d046549_P002	Maize	cytosol	38.43	33.09
Zm00001d033505_P001	Maize	cytosol	34.4	27.78
Zm00001d025948_P001	Maize	plastid	21.0	23.05
Zm00001d002822_P001	Maize	plastid	20.88	22.89
Zm00001d034826_P001	Maize	mitochondrion, plastid	19.1	21.38
Zm00001d043494_P005	Maize	mitochondrion	16.73	19.0
Zm00001d000213_P001	Maize	mitochondrion	15.3	18.97
Zm00001d015929_P002	Maize	plastid	14.95	18.78
Zm00001d053861_P005	Maize	plastid	14.95	18.75

Protein Annotations

EntrezGene:100285098	EntrezGene:103644301	MapMan:17.5.2.1	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240
Gene3D:3.30.70.870	Gene3D:3.40.50.300	Gene3D:3.90.1430.10	UniProt:B6U0S1	InterPro:EFG_III/V	InterPro:EFG_V-like
InterPro:EFTu-like_2	EMBL:EU970836	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	InterPro:IPR014721	ProteinID:ONM11356.1
ProteinID:ONM11358.1	ProteinID:ONM11359.1	ProteinID:ONM11360.1	ProteinID:ONM11361.1	ProteinID:ONM11363.1	ProteinID:ONM11364.1
ProteinID:ONM11366.1	ProteinID:ONM11367.1	ProteinID:ONM11368.1	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679
PFAM:PF03144	PFAM:PF03764	PFAM:PF14492	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722
PANTHER:PTHR42908	PANTHER:PTHR42908:SF11	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889
SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom
TIGRFAMs:TIGR00231	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	UniParc:UPI000182F1FB	EnsemblPlantsGene:Zm00001d034773	EnsemblPlants:Zm00001d034773_P001
EnsemblPlants:Zm00001d034773_T001	:	:	:	:	:

Description

Elongation factor 2

Coordinates

chr1:+:301813401..301817696

Molecular Weight (calculated)

93927.9 Da

IEP (calculated)

6.279

GRAVY (calculated)

-0.211

Length

843 amino acids

Sequence
(BLAST)

001: MVKFTAEELR AIMDKKNNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDESLKNYK GERDGNQYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVE GEEAYQTFSR VIENANVIMA TYEDKLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVDETKM MERLWGENFF DPATKKWTTK NTGSPTCKRG FVQFCYEPIK QIIKTCMNDQ KEKLWPMLQK
301: LNVTMKADEK ELIGKALMKR VMQTWLPAST ALLEMMIFHL PSPAKAQKYR VENLYEGPLD DVYATAIRNC DPEGPLMLYV SKMIPASDKG RFFAFGRVFS
401: GKVATGMKVR IMGPNYVPGQ KKDLYVKSVQ RTVIWMGKKQ ESVEDVPCGN TVAMVGLDQF ITKNATLTNE KETDACPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVLC TMEESGEHII AGAGELHLEI CLKDLQEDFM GGAEIIVSPP VVSFRETVLE KSCRTVMSKS PNKHNRLYME ARPLEEGLAE
601: AIDDGRIGPR DDPKVRSQIL SQEFGWDKDL AKKIWCFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGALAEE NMRGICFEVC DVVLHADAIH
701: RGGGQVIPTA RRVIYASQLT AKPRLLEPVY LVEIQAPENA LGGIYGVLNQ KRGHVFEEMQ RPGTPLYNIK AFLPVIESFG FSSQLRAATS GQAFPQCVFD
801: HWDMMGSDPL EAGSQAAQLV LDIRKRKGLK EQMTPLSEFE DKL

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.