Factsheet for Solyc08g062920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	92.87	99.87
CDY49975	Canola	cytosol	45.29	93.98
KRH43759	Soybean	nucleus	95.17	93.48
KRH13696	Soybean	nucleus	95.05	93.36
OQU75622	Sorghum	cytosol	38.16	93.22
VIT_19s0027g00760.t01	Wine grape	cytosol	95.29	92.5
GSMUA_Achr10P...	Banana	cytosol	85.99	92.35
CDX90241	Canola	cytosol, extracellular	88.16	92.29
Bra010782.1-P	Field mustard	cytosol	93.72	92.05
EES01455	Sorghum	cytosol	93.6	91.93
KXG37185	Sorghum	cytosol	93.6	91.93
KXG37183	Sorghum	cytosol	93.6	91.93
AT1G56070.2	Thale cress	cytosol	93.6	91.93
TraesCS3D01G220900.1	Wheat	golgi	93.36	91.7
TraesCS3A01G232300.1	Wheat	cytosol, golgi	93.12	91.46
Zm00001d012770_P001	Maize	plastid	93.12	91.46
CDY05533	Canola	cytosol	72.1	91.42
Zm00001d034771_P002	Maize	cytosol	92.87	91.22
TraesCS3B01G261500.1	Wheat	cytosol	92.87	91.22
Zm00001d034776_P001	Maize	cytosol	92.87	91.22
Zm00001d034773_P001	Maize	cytosol	92.87	91.22
TraesCS5D01G509700.1	Wheat	cytosol	90.82	91.15
TraesCS5B01G509600.1	Wheat	cytosol, golgi	92.75	91.1
TraesCS5D01G509600.1	Wheat	cytosol	92.75	91.1
CDY32072	Canola	cytosol	71.14	91.04
TraesCS5B01G509500.1	Wheat	cytosol, golgi, nucleus	92.63	90.98
HORVU5Hr1G116580.1	Barley	cytosol, plasma membrane	92.63	90.98
TraesCS4A01G363800.1	Wheat	cytosol, nucleus, plastid	92.63	90.98
HORVU3Hr1G057880.1	Barley	cytosol	92.51	90.87
HORVU3Hr1G057890.1	Barley	cytosol	92.51	90.87
TraesCS5D01G509800.1	Wheat	cytosol	49.03	90.83
CDY70516	Canola	cytosol	55.68	90.57
TraesCS7D01G449300.1	Wheat	cytosol	92.15	90.51
Bra010781.1-P	Field mustard	cytosol	60.27	90.4
TraesCS7A01G461100.1	Wheat	cytosol, nucleus, unclear	92.03	90.39
TraesCS7B01G362600.1	Wheat	cytosol	92.03	90.39
HORVU7Hr1G106150.1	Barley	cytosol	92.03	90.39
TraesCS4A01G363700.1	Wheat	cytosol, golgi, unclear	91.79	90.15
TraesCS5B01G509700.1	Wheat	cytosol, golgi	91.67	90.04
CDY70526	Canola	nucleus	9.18	89.41
CDY49974	Canola	nucleus	9.18	89.41
GSMUA_Achr4P01020_001	Banana	cytosol	93.36	88.95
TraesCS2A01G234500.1	Wheat	cytosol	13.41	88.8
TraesCS7A01G288600.1	Wheat	cytosol	13.04	88.52
CDY24982	Canola	endoplasmic reticulum, vacuole	89.49	88.42
Bra017279.1-P	Field mustard	cytosol	93.6	88.27
TraesCS6A01G189500.1	Wheat	cytosol, nucleus, plastid	13.29	88.0
AT3G12915.2	Thale cress	cytosol	83.7	87.94
CDY40423	Canola	cytosol	83.57	87.93
Os01t0742200-01	Rice	cytosol, nucleus	87.68	87.89
TraesCS4A01G363900.1	Wheat	plastid	68.72	86.61
HORVU5Hr1G116710.1	Barley	cytosol	59.54	83.99
Bra020542.1-P	Field mustard	cytosol	93.48	81.9
KRH43761	Soybean	cytosol, nucleus, plastid	19.08	79.0
KRH13693	Soybean	mitochondrion	75.72	75.82
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	38.53	72.83
KRH13692	Soybean	cytosol, mitochondrion	60.51	70.07
Zm00001d020342_P001	Maize	mitochondrion	32.97	68.42
CDY54261	Canola	nucleus	16.79	60.43
TraesCS1D01G023700.1	Wheat	cytosol	61.35	60.4
TraesCS1A01G027600.1	Wheat	cytosol	60.14	58.93
TraesCS1D01G026800.1	Wheat	cytosol	48.67	57.9
TraesCSU01G002600.1	Wheat	cytosol	59.3	56.89
TraesCS1B01G033500.1	Wheat	cytosol	25.48	52.36
HORVU1Hr1G003960.9	Barley	cytosol	57.97	52.06
Os05t0467501-00	Rice	cytosol	28.5	51.75
Solyc07g007210.2.1	Tomato	nucleus	38.65	34.59
Solyc11g071770.1.1	Tomato	cytosol	35.63	28.81
Solyc08g079180.2.1	Tomato	plastid	21.01	22.11
Solyc01g090690.2.1	Tomato	plastid	18.36	20.0
Solyc07g053470.2.1	Tomato	mitochondrion	15.94	19.82
Solyc03g058880.2.1	Tomato	mitochondrion	15.22	19.09
Solyc03g058190.2.1	Tomato	plastid	15.34	18.9
Solyc04g015450.2.1	Tomato	nucleus	14.98	18.21

Protein Annotations

MapMan:17.5.2.1	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:G_TR_CS
InterPro:IPR000795	InterPro:IPR014721	UniProt:K4CL75	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679
PFAM:PF03144	PFAM:PF03764	PFAM:PF14492	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722
PANTHER:PTHR42908	PANTHER:PTHR42908:SF11	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889
SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	EnsemblPlantsGene:Solyc08g062920.2
EnsemblPlants:Solyc08g062920.2.1	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	UniParc:UPI000276B2C6
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:52337643..52343106

Molecular Weight (calculated)

92388.5 Da

IEP (calculated)

6.056

GRAVY (calculated)

-0.251

Length

828 amino acids

Sequence
(BLAST)

001: MVKFTAEELR RIMDFKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDDSLRNFK GERNGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CVEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVD GEEAYQTFQR VIENANVIMA TYEDPLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVDESKM MERLWGENFF DPATKKWTTK NTGTASCKRG FVQFCYEPIK QIINTCMNDQ KDKLWPMLQK
301: LGVTMKSDEK DLMGKALMKR VMQTWLPAST ALLEMMIYHL PSPSTAQKYR VENLYEGPLD DAYANAIRNC DPEGPLMLYV SKMIPASDKG RFFAFGRVFA
401: GKVSTGMKVR IMGPNYVPGE KKDLYVKNIQ RTVIWMGKRQ ETVEDVPCGN TVAMVGLDQF ITKNATLTNE KEVDAHPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVVC SIEESGEHII AGAGELHLEI CLKDLQDDFM GGAEIIKSDP VVSFRETVLE KSTRTVMSKS PNKHNRLYME ARPMEEGLAE
601: AIDEGRIGPR DDPKVRSKIL AEEFGWDKDL AKKIWCFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGALAEE NMRGICFEVC DVVLHSDAIH
701: RGGGQVIPTA RRVIYASQLT APEQALGGIY SVLNQKRGHV FEEMQRPGTP LYNIKAYLPV VESFGFSGTL RAATSGQAFP QCVFDHWEMM SSDPLEAGSQ
801: AHQLVLDIRK RKGLKDQMTP LSEFEDKL

Best Arabidopsis Sequence Match ( AT1G56070.1 )
(BLAST)

001: MVKFTADELR RIMDYKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDESLKSFT GARDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVD GEEAYQTFSR VIENANVIMA TYEDPLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVVESKM MERLWGENFF DPATRKWSGK NTGSPTCKRG FVQFCYEPIK QIIATCMNDQ KDKLWPMLAK
301: LGVSMKNDEK ELMGKPLMKR VMQTWLPAST ALLEMMIFHL PSPHTAQRYR VENLYEGPLD DQYANAIRNC DPNGPLMLYV SKMIPASDKG RFFAFGRVFA
401: GKVSTGMKVR IMGPNYIPGE KKDLYTKSVQ RTVIWMGKRQ ETVEDVPCGN TVAMVGLDQF ITKNATLTNE KEVDAHPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVVC TMEESGEHIV AGAGELHLEI CLKDLQDDFM GGAEIIKSDP VVSFRETVCD RSTRTVMSKS PNKHNRLYME ARPMEEGLAE
601: AIDDGRIGPR DDPKIRSKIL AEEFGWDKDL AKKIWAFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGPLAEE NMRGICFEVC DVVLHSDAIH
701: RGGGQVIPTA RRVIYASQIT AKPRLLEPVY MVEIQAPEGA LGGIYSVLNQ KRGHVFEEMQ RPGTPLYNIK AYLPVVESFG FSSQLRAATS GQAFPQCVFD
801: HWEMMSSDPL EPGTQASVLV ADIRKRKGLK EAMTPLSEFE DKL

Arabidopsis Description

LOS1Elongation factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.