CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49975	Canola	cytosol	50.7	100.0
CDX90241	Canola	cytosol, extracellular	91.23	90.77
CDY05533	Canola	cytosol	73.32	88.36
CDY32072	Canola	cytosol	72.17	87.79
OQU75622	Sorghum	cytosol	37.48	87.02
TraesCS5D01G509800.1	Wheat	cytosol	49.17	86.58
TraesCS2A01G234500.1	Wheat	cytosol	13.72	86.4
TraesCS7A01G288600.1	Wheat	cytosol	13.34	86.07
AT1G56070.2	Thale cress	cytosol	91.99	85.88
TraesCS6A01G189500.1	Wheat	cytosol, nucleus, plastid	13.6	85.6
CDY70516	Canola	cytosol	55.27	85.46
Bra017279.1-P	Field mustard	cytosol	94.92	85.08
CDY24982	Canola	endoplasmic reticulum, vacuole	90.09	84.61
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	82.34	84.16
KRH13696	Soybean	nucleus	89.96	83.99
KRH43759	Soybean	nucleus	89.58	83.63
Solyc08g062920.2.1	Tomato	nucleus, plastid	87.93	83.57
KXG37185	Sorghum	cytosol	88.18	82.33
EES01455	Sorghum	cytosol	88.18	82.33
KXG37183	Sorghum	cytosol	88.18	82.33
Zm00001d034776_P001	Maize	cytosol	88.18	82.33
Zm00001d034773_P001	Maize	cytosol	88.18	82.33
Zm00001d012770_P001	Maize	plastid	88.18	82.33
VIT_19s0027g00760.t01	Wine grape	cytosol	89.07	82.18
TraesCS3A01G232300.1	Wheat	cytosol, golgi	87.93	82.09
Zm00001d034771_P002	Maize	cytosol	87.93	82.09
TraesCS3D01G220900.1	Wheat	golgi	87.8	81.97
TraesCS4A01G363800.1	Wheat	cytosol, nucleus, plastid	87.67	81.85
TraesCS3B01G261500.1	Wheat	cytosol	87.67	81.85
TraesCS7D01G449300.1	Wheat	cytosol	87.67	81.85
HORVU7Hr1G106150.1	Barley	cytosol	87.55	81.73
TraesCS7A01G461100.1	Wheat	cytosol, nucleus, unclear	87.55	81.73
TraesCS7B01G362600.1	Wheat	cytosol	87.55	81.73
TraesCS4A01G363700.1	Wheat	cytosol, golgi, unclear	87.42	81.61
HORVU5Hr1G116580.1	Barley	cytosol, plasma membrane	87.42	81.61
TraesCS5D01G509600.1	Wheat	cytosol	87.42	81.61
TraesCS5B01G509700.1	Wheat	cytosol, golgi	87.42	81.61
TraesCS5B01G509600.1	Wheat	cytosol, golgi	87.42	81.61
TraesCS5B01G509500.1	Wheat	cytosol, golgi, nucleus	87.42	81.61
GSMUA_Achr10P...	Banana	cytosol	79.92	81.58
HORVU3Hr1G057890.1	Barley	cytosol	87.29	81.49
HORVU3Hr1G057880.1	Barley	cytosol	87.29	81.49
AT3G12915.2	Thale cress	cytosol	81.58	81.47
TraesCS5D01G509700.1	Wheat	cytosol	85.39	81.45
Os01t0742200-01	Rice	cytosol, nucleus	85.01	80.99
GSMUA_Achr4P01020_001	Banana	cytosol	88.18	79.86
TraesCS4A01G363900.1	Wheat	plastid	65.06	77.93
KRH43761	Soybean	cytosol, nucleus, plastid	19.7	77.5
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	41.42	74.43
HORVU5Hr1G116710.1	Barley	cytosol	54.38	72.91
KRH13693	Soybean	mitochondrion	72.81	69.29
KRH13692	Soybean	cytosol, mitochondrion	59.09	65.03
Zm00001d020342_P001	Maize	mitochondrion	32.02	63.16
TraesCS1D01G023700.1	Wheat	cytosol	59.85	56.0
TraesCS1D01G026800.1	Wheat	cytosol	48.79	55.17
TraesCS1A01G027600.1	Wheat	cytosol	58.83	54.79
TraesCSU01G002600.1	Wheat	cytosol	58.2	53.07
Os05t0467501-00	Rice	cytosol	29.1	50.22
HORVU1Hr1G003960.9	Barley	cytosol	57.56	49.13
TraesCS1B01G033500.1	Wheat	cytosol	24.27	47.39
CDY54261	Canola	nucleus	11.94	40.87
CDY10337	Canola	cytosol	22.74	37.76
CDY70689	Canola	cytosol	23.89	34.75
CDY15566	Canola	cytosol	36.72	34.69
CDY71233	Canola	mitochondrion, nucleus	24.14	34.05
CDY32224	Canola	cytosol	22.24	33.98
CDY09982	Canola	nucleus	37.36	29.73
CDY10688	Canola	cytosol	31.89	28.78
CDY31838	Canola	plastid	20.97	21.29
CDY46917	Canola	plastid	20.97	21.29
CDY69302	Canola	cytosol	8.51	21.0
CDX84803	Canola	mitochondrion	16.01	20.19
CDX74705	Canola	plastid	19.06	19.87
CDY18957	Canola	plastid	19.06	19.84
CDY19061	Canola	mitochondrion	16.14	18.98
CDY54484	Canola	mitochondrion	16.01	18.83
CDY44781	Canola	plastid	15.12	17.63
CDY40739	Canola	plastid	15.12	17.4
CDX67441	Canola	plastid	14.99	17.2
CDY65319	Canola	endoplasmic reticulum, plastid, vacuole	14.99	17.15
CDX91105	Canola	plastid	14.49	16.91
CDY65992	Canola	plastid	14.49	16.91
CDY09816	Canola	plastid	14.49	16.89
CDX85635	Canola	plastid	14.49	16.1
CDY32225	Canola	nucleus	6.99	15.54
CDY49974	Canola	nucleus	1.65	15.29
CDY70526	Canola	nucleus	1.52	14.12
CDX78349	Canola	cytosol	4.07	13.85
CDY23967	Canola	cytosol	1.27	8.62

Protein Annotations

MapMan:17.5.2.1	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	GO:A0A078HUH6	UniProt:A0A078HUH6	EnsemblPlants:CDY40423	ProteinID:CDY40423	ProteinID:CDY40423.1
InterPro:EFG_III/V	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00069636001	InterPro:G_TR_CS	InterPro:IPR000795
InterPro:IPR014721	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03144	PFAM:PF03764	PFAM:PF14492
PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF11	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980
InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	UniParc:UPI0004EEE85B

Description

BnaA04g20940DElongation factor 2 [Source:Projected from Arabidopsis thaliana (AT1G56070) UniProtKB/Swiss-Prot;Acc:Q9ASR1]

Coordinates

chrLK032470:+:79761..85698

Molecular Weight (calculated)

87258.2 Da

IEP (calculated)

5.747

GRAVY (calculated)

-0.213

Length

787 amino acids

Sequence
(BLAST)

001: MSVIAHVDHG KSTLTDSLVA AAGIIAQEVA GDVRMTDTRA DEAERGITIK STGISLYYEM TDASLKSFTG ARDGNEYLIN LIDSPGHVDF SSEVTAALRI
101: TDGALVVVDC IEGVCVQTET VLRQALGERI RPVLTVNKMD RCFLELQVDG EEAYQTFQRV IENANVIMAT YEDPLLGDVQ VYPEKGTVAF SAGLHGWAFT
201: LTNFAKMYAS KFGVDETKMM ERLWGENFFD PATRKWSSKN TGSATCKRGF VQFCYEPIKQ IIATCMNDQK DKLWPMLQKL GVQMKSDEKE LMGKPLMKRV
301: MQTWLPASTA LLEMMIFHLP SPHTAQRYRV ENLYEGPLDD QYATAIRNCD PNGPLMLYVS KMIPASDKGR FFAFGRVFSG KVSTGMKVRI MGPNFVPGEK
401: KDLYVKSVQR TVIWMGKRQE TVEDVPCGNT VAMVGLDQFI TKNATLTNEK EVDAHPIRAM KFSVSPVVRV AVQCKVASDL PKLVEGLKRL AKSDPMVVCT
501: MEESGEHIVA GAGELHLEIC LKDLQDDFMG GAEIVKSDPV VSFRETVLER SVRTVMSKSP NKHNRLYMEA RPLEDGLAEA IDEGRIGPRD DPKIRSKILA
601: EEFGWDKDLA KKIWAFGPET TGPNMVVDMC KGVQYLNEIK DSVVAGFQWA SKEGPLCDEN MRGICFEVCD VVLHSDAIHR GGGQVIPTAR RVIYASQLTA
701: KPRLLEPVYM VEIQAPEGAL GGIYSVLNQK RGHSSIGNVF ELIARMSSKE SDFIQTFGEE RCEAARSNPL IAKASAMSGD DTERERA

Best Arabidopsis Sequence Match ( AT1G56070.1 )
(BLAST)

001: MVKFTADELR RIMDYKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDESLKSFT GARDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVD GEEAYQTFSR VIENANVIMA TYEDPLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVVESKM MERLWGENFF DPATRKWSGK NTGSPTCKRG FVQFCYEPIK QIIATCMNDQ KDKLWPMLAK
301: LGVSMKNDEK ELMGKPLMKR VMQTWLPAST ALLEMMIFHL PSPHTAQRYR VENLYEGPLD DQYANAIRNC DPNGPLMLYV SKMIPASDKG RFFAFGRVFA
401: GKVSTGMKVR IMGPNYIPGE KKDLYTKSVQ RTVIWMGKRQ ETVEDVPCGN TVAMVGLDQF ITKNATLTNE KEVDAHPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVVC TMEESGEHIV AGAGELHLEI CLKDLQDDFM GGAEIIKSDP VVSFRETVCD RSTRTVMSKS PNKHNRLYME ARPMEEGLAE
601: AIDDGRIGPR DDPKIRSKIL AEEFGWDKDL AKKIWAFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGPLAEE NMRGICFEVC DVVLHSDAIH
701: RGGGQVIPTA RRVIYASQIT AKPRLLEPVY MVEIQAPEGA LGGIYSVLNQ KRGHVFEEMQ RPGTPLYNIK AYLPVVESFG FSSQLRAATS GQAFPQCVFD
801: HWEMMSSDPL EPGTQASVLV ADIRKRKGLK EAMTPLSEFE DKL

Arabidopsis Description

LOS1Elongation factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.