Factsheet for TraesCS1D01G026800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G033500.1	Wheat	cytosol	53.74	92.8
TraesCS1A01G027600.1	Wheat	cytosol	89.22	73.49
TraesCSU01G002600.1	Wheat	cytosol	83.91	67.67
HORVU1Hr1G003960.9	Barley	cytosol	77.01	58.13
CDY70516	Canola	cytosol	42.24	57.76
CDY05533	Canola	cytosol	54.17	57.73
CDY32072	Canola	cytosol	53.16	57.19
Bra010781.1-P	Field mustard	cytosol	43.97	55.43
TraesCS1D01G023700.1	Wheat	cytosol	62.21	51.49
TraesCS3D01G220900.1	Wheat	golgi	61.35	50.65
TraesCS5D01G509600.1	Wheat	cytosol	60.34	49.82
GSMUA_Achr10P...	Banana	cytosol	55.17	49.81
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	54.89	49.61
TraesCS7D01G449300.1	Wheat	cytosol	59.91	49.47
TraesCS5D01G509700.1	Wheat	cytosol	58.33	49.21
KRH43759	Soybean	nucleus	59.48	49.11
KRH13696	Soybean	nucleus	59.34	48.99
VIT_19s0027g00760.t01	Wine grape	cytosol	59.91	48.89
CDY40423	Canola	cytosol	55.17	48.79
Solyc08g062920.2.1	Tomato	nucleus, plastid	57.9	48.67
Bra010782.1-P	Field mustard	cytosol	58.76	48.52
CDX90241	Canola	cytosol, extracellular	55.03	48.42
GSMUA_Achr4P01020_001	Banana	cytosol	60.2	48.22
AT1G56070.2	Thale cress	cytosol	58.33	48.16
AT3G12915.2	Thale cress	cytosol	52.87	46.7
Bra017279.1-P	Field mustard	cytosol	58.48	46.36
CDY24982	Canola	endoplasmic reticulum, vacuole	54.31	45.11
TraesCS5D01G509800.1	Wheat	cytosol	28.59	44.52
CDY49975	Canola	cytosol	25.29	44.11
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	27.73	44.06
KRH13693	Soybean	mitochondrion	51.87	43.65
KRH43761	Soybean	cytosol, nucleus, plastid	12.5	43.5
Bra020542.1-P	Field mustard	cytosol	58.62	43.17
CDY49974	Canola	nucleus	5.03	41.18
CDY70526	Canola	nucleus	4.89	40.0
KRH13692	Soybean	cytosol, mitochondrion	39.8	38.74
CDY54261	Canola	nucleus	11.35	34.35
Os05t0467501-00	Rice	cytosol	20.11	30.7
TraesCS7D01G376800.1	Wheat	cytosol	29.45	20.62
TraesCS1D01G049600.1	Wheat	cytosol	28.02	20.35
TraesCS5D01G380500.1	Wheat	cytosol	28.74	19.14
TraesCS2D01G383800.1	Wheat	mitochondrion, plastid	15.52	14.06
TraesCS7D01G344300.4	Wheat	mitochondrion	14.66	13.08
TraesCS3D01G291300.1	Wheat	mitochondrion	11.78	12.18
TraesCS6D01G183500.1	Wheat	plastid	9.91	10.27
TraesCS7D01G081700.2	Wheat	mitochondrion	9.63	10.06
TraesCS6D01G120800.1	Wheat	plastid	9.48	9.85

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300	Gene3D:3.90.1430.10
MapMan:35.1	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005525	InterPro:IPR014721	InterPro:P-loop_NTPase	PFAM:PF00679	PFAM:PF03144
PFAM:PF03764	PFAM:PF14492	PANTHER:PTHR42908	PANTHER:PTHR42908:SF11	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr
SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980
EnsemblPlantsGene:TraesCS1D01G026800	EnsemblPlants:TraesCS1D01G026800.1	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	TIGR:cd01681	TIGR:cd16268
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:10808283..10810373

Molecular Weight (calculated)

77517.8 Da

IEP (calculated)

8.425

GRAVY (calculated)

-0.099

Length

696 amino acids

Sequence
(BLAST)

001: MVRPVLCLNK MDELFPGLQG EVVKHKFTGE QTYQILNNVI QNANATMATH GDARLGDVQF YPEKGNVAFS AGLHGWAFTL TSFAKVYAPK VGVEESYMVK
101: KLWGDNFYDH TTRKWTKEKT RSKTCKRGFV MFIYDQIERV IQACMENQKD ELRRMLQKVG VNLMDDEKNL TGMALVKCVM KTWLPASTAL LEMMICHLPS
201: PLEAQKYRVE NLYEGPLDDK YAEAIKKCDP EGPLMLYVSK MVPASDVGRF FAFGRVFSGR IATGMKVRVM GPSYVPGMGT DLNVESVQRT IIWMGKKQCD
301: VPDVPCGNTV GLIGLDACII KSATLTSEKE VVARPIRAMK FSVCPLMFVT VNCKVPTDVP KLVQGLKRLA MSDPVVLCSQ VEPGTYTVAG VGELHLEICL
401: KDLQENFMDG VEVAVSSPPV VSFRETVRKS CDPVEKKFRN NQIRYSLSVV ARPLDEKVVE AIEDGRLGPR TDHAVRSEIL AKHGWDKDLG DKIWCFGPDA
501: VGPNVIVNRC KVIQNLELAK KVIVAGFEVV AKEGALAKER MHGICFEVHN VIIHADEALR GTTAQLNEMV RTALIESQLA AKPRLLEPTY TVAIQCPKSA
601: LSTIYGILHQ RNGAVYEEFV REGTMLHILK AYVPVYDSFG LSKAISAATS KLVTPQCIFG YWSDMCSDPF QANAPAGQMV LDIRERKKMG RPSFQK

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.