Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G380300.1 | Wheat | nucleus | 99.7 | 99.7 |
| TraesCS7B01G282300.1 | Wheat | cytosol | 99.6 | 99.6 |
| HORVU7Hr1G090710.6 | Barley | plastid | 96.58 | 96.97 |
| EER90029 | Sorghum | cytosol | 93.66 | 93.57 |
| Os06t0608300-01 | Rice | nucleus | 93.76 | 93.48 |
| Zm00001d046549_P002 | Maize | cytosol | 91.35 | 92.75 |
| GSMUA_Achr4P09280_001 | Banana | cytosol, nucleus, plastid | 83.1 | 85.07 |
| CDY70689 | Canola | cytosol | 45.88 | 84.29 |
| CDY71233 | Canola | mitochondrion, nucleus | 47.18 | 84.05 |
| Solyc07g007210.2.1 | Tomato | nucleus | 76.16 | 81.84 |
| VIT_11s0118g00720.t01 | Wine grape | nucleus | 80.38 | 80.87 |
| CDY15566 | Canola | cytosol | 67.71 | 80.79 |
| KRH20245 | Soybean | nucleus | 78.57 | 79.21 |
| KRH03566 | Soybean | nucleus | 78.67 | 79.15 |
| PGSC0003DMT400078978 | Potato | cytosol | 78.27 | 78.82 |
| Bra030642.1-P | Field mustard | cytosol | 76.76 | 77.31 |
| CDY09982 | Canola | nucleus | 76.76 | 77.15 |
| Bra024798.1-P | Field mustard | cytosol | 76.36 | 77.13 |
| AT1G06220.2 | Thale cress | cytosol | 76.36 | 76.9 |
| AT5G25230.1 | Thale cress | cytosol | 74.65 | 76.26 |
| CDY69302 | Canola | cytosol | 21.73 | 67.71 |
| TraesCS3D01G220900.1 | Wheat | golgi | 32.19 | 37.96 |
| TraesCS5D01G509700.1 | Wheat | cytosol | 31.29 | 37.7 |
| TraesCS5D01G509600.1 | Wheat | cytosol | 31.89 | 37.6 |
| TraesCS7D01G449300.1 | Wheat | cytosol | 31.79 | 37.49 |
| TraesCS5D01G509800.1 | Wheat | cytosol | 14.59 | 32.44 |
| TraesCS1D01G023700.1 | Wheat | cytosol | 25.75 | 30.44 |
| TraesCS1D01G026800.1 | Wheat | cytosol | 20.62 | 29.45 |
| TraesCS5D01G380500.1 | Wheat | cytosol | 25.65 | 24.4 |
| TraesCS1D01G049600.1 | Wheat | cytosol | 23.34 | 24.22 |
| TraesCS2D01G383800.1 | Wheat | mitochondrion, plastid | 16.6 | 21.48 |
| TraesCS7D01G344300.4 | Wheat | mitochondrion | 15.09 | 19.23 |
| TraesCS3D01G291300.1 | Wheat | mitochondrion | 12.17 | 17.98 |
| TraesCS6D01G183500.1 | Wheat | plastid | 11.57 | 17.11 |
| TraesCS7D01G081700.2 | Wheat | mitochondrion | 11.07 | 16.52 |
| TraesCS6D01G120800.1 | Wheat | plastid | 10.87 | 16.12 |
Protein Annotations
| MapMan:16.4.1.4.2 | Gene3D:2.40.30.10 | Gene3D:3.30.230.10 | Gene3D:3.30.70.240 | Gene3D:3.30.70.870 | Gene3D:3.40.50.300 |
| Gene3D:3.90.1430.10 | InterPro:EFG_III/V | InterPro:EFG_V-like | InterPro:EFTUD2_N | InterPro:EFTu-like_2 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 |
| InterPro:IPR000795 | InterPro:IPR014721 | InterPro:P-loop_NTPase | PFAM:PF00009 | PFAM:PF00679 | PFAM:PF03144 |
| PFAM:PF03764 | PFAM:PF16004 | PRINTS:PR00315 | PFscan:PS51722 | PANTHER:PTHR42908 | PANTHER:PTHR42908:SF6 |
| InterPro:Ribosomal_S5_D2-typ_fold | InterPro:Ribosomal_S5_D2-typ_fold_subgr | SMART:SM00838 | SMART:SM00889 | SUPFAM:SSF50447 | SUPFAM:SSF52540 |
| SUPFAM:SSF54211 | SUPFAM:SSF54980 | InterPro:Small_GTP-bd_dom | InterPro:TF_GTP-bd_dom | TIGRFAMs:TIGR00231 | EnsemblPlantsGene:TraesCS7D01G376800 |
| EnsemblPlants:TraesCS7D01G376800.1 | InterPro:Transl_B-barrel_sf | InterPro:Transl_elong_EFG/EF2_IV | InterPro:U5-116kDa_C | TIGR:cd01683 | TIGR:cd04090 |
| TIGR:cd04098 | TIGR:cd04167 | TIGR:cd16264 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7D:-:488045376..488051103
Molecular Weight (calculated)
110233.0 Da
IEP (calculated)
4.995
GRAVY (calculated)
-0.189
Length
994 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSLYDEFG NYIGPELADS DADDSDAAAS PSPSQSRSPS PARSPSGSPN SRRPAALMDV DDDDYADAAQ NAVVLAEDKK YYPTAEEVYG PGVEALVMDE
101: DEQALEKPIV APPRVVKFEV GTRAGATSTY ASTDFILGLA SNPLLVRNVA LVGHLQHGKT VFMDMLVEQT HEVDTFDSEG ERHIRFTDTR VDEQERRVSI
201: KAVPMSLVLE SGNGKSYLCN IMDTPGHVNF SDEMTAALRL ADGAVLVVDA AEGVMVNTER AIRHAIQERL PIVVVINKVD RLITELKLPP NDAYFKLRHT
301: LDTINDLISS CSTTVGGTQL VDPAAGNVCF ASGSAGWSFT LQSFAHLYLK IHGIQFDHEK FASRLWGDLY YDHNSRTFKK KPPAAGANRS FIEFILEPLY
401: KIYSQVVGEQ QKILEITLAD LGVTLSNAAY KLNVRPLLRL ACRSIFGTAT GFTDMLVKNI PNVKDGAARK IEHIYTGQQD SSIVDAMKKC DSHGPLMVNV
501: TKLYPKPDCS VFDAFGRVYS GTIQTGQTVR VLGEGYSPDD EEDMTVKEVT KLWVYQARYR VPISNAPAGS WVLIEGVDAS IMKTATICPM NMDEDVYIFR
601: PLRFNTLPVV KIAAEPLNPS ELPKMVEGLR KISKSYPLAI TKVEESGEHT ILGTGELYLD SIMKDLRELY SEVEVKVADP VVTFCETVVD TSSMKCFAET
701: PNKRNKITML AEPLEKGLAE DIENGLVSLD SRQKEVTDFF RQRYQWDVLA ARSIWAFGPD KQGPNILLDD SLSVEVDKNL LNAVKDSIVQ GFQWGAREGP
801: LCDEPIRNVK FKILNANIAP EPLHRGGGQI IPTARRVVYS AFLMANPRLM EPVYYIEIQT PIDCVSAIYT VLSRRRGHVT ADVPKPGTPV YVVKAFLPVI
901: ESFGFETDLR YHTQGQAFCV SVFDHWAIVP GDPLDKGIVL RPLEPAPIQH LAREFMVKTR RRKGMSEDVS INKFFDEAMM NELAQQTADI HLMM
101: DEQALEKPIV APPRVVKFEV GTRAGATSTY ASTDFILGLA SNPLLVRNVA LVGHLQHGKT VFMDMLVEQT HEVDTFDSEG ERHIRFTDTR VDEQERRVSI
201: KAVPMSLVLE SGNGKSYLCN IMDTPGHVNF SDEMTAALRL ADGAVLVVDA AEGVMVNTER AIRHAIQERL PIVVVINKVD RLITELKLPP NDAYFKLRHT
301: LDTINDLISS CSTTVGGTQL VDPAAGNVCF ASGSAGWSFT LQSFAHLYLK IHGIQFDHEK FASRLWGDLY YDHNSRTFKK KPPAAGANRS FIEFILEPLY
401: KIYSQVVGEQ QKILEITLAD LGVTLSNAAY KLNVRPLLRL ACRSIFGTAT GFTDMLVKNI PNVKDGAARK IEHIYTGQQD SSIVDAMKKC DSHGPLMVNV
501: TKLYPKPDCS VFDAFGRVYS GTIQTGQTVR VLGEGYSPDD EEDMTVKEVT KLWVYQARYR VPISNAPAGS WVLIEGVDAS IMKTATICPM NMDEDVYIFR
601: PLRFNTLPVV KIAAEPLNPS ELPKMVEGLR KISKSYPLAI TKVEESGEHT ILGTGELYLD SIMKDLRELY SEVEVKVADP VVTFCETVVD TSSMKCFAET
701: PNKRNKITML AEPLEKGLAE DIENGLVSLD SRQKEVTDFF RQRYQWDVLA ARSIWAFGPD KQGPNILLDD SLSVEVDKNL LNAVKDSIVQ GFQWGAREGP
801: LCDEPIRNVK FKILNANIAP EPLHRGGGQI IPTARRVVYS AFLMANPRLM EPVYYIEIQT PIDCVSAIYT VLSRRRGHVT ADVPKPGTPV YVVKAFLPVI
901: ESFGFETDLR YHTQGQAFCV SVFDHWAIVP GDPLDKGIVL RPLEPAPIQH LAREFMVKTR RRKGMSEDVS INKFFDEAMM NELAQQTADI HLMM
001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI
Arabidopsis Description
CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.