CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
nucleus: 24385303
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 24385303 doi

S Komatsu, S Hiraga, MZ Nouri

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba, 305-8518, Japan, skomatsu@affrc.go.jp.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20245	Soybean	nucleus	98.08	98.28
CDY71233	Canola	mitochondrion, nucleus	50.91	90.14
Solyc07g007210.2.1	Tomato	nucleus	84.11	89.84
CDY70689	Canola	cytosol	49.19	89.83
VIT_11s0118g00720.t01	Wine grape	nucleus	89.78	89.78
PGSC0003DMT400078978	Potato	cytosol	87.65	87.74
CDY15566	Canola	cytosol	73.79	87.52
AT1G06220.2	Thale cress	cytosol	85.43	85.51
Bra024798.1-P	Field mustard	cytosol	85.02	85.37
Bra030642.1-P	Field mustard	cytosol	85.22	85.31
GSMUA_Achr4P09280_001	Banana	cytosol, nucleus, plastid	83.7	85.17
CDY09982	Canola	nucleus	84.82	84.73
AT5G25230.1	Thale cress	cytosol	83.2	84.48
EER90029	Sorghum	cytosol	80.67	80.1
Zm00001d046549_P002	Maize	cytosol	79.25	79.98
Os06t0608300-01	Rice	nucleus	80.16	79.44
TraesCS7D01G376800.1	Wheat	cytosol	79.15	78.67
TraesCS7B01G282300.1	Wheat	cytosol	79.15	78.67
TraesCS7A01G380300.1	Wheat	nucleus	79.05	78.57
CDY69302	Canola	cytosol	25.1	77.74
HORVU7Hr1G090710.6	Barley	plastid	76.72	76.57
KRH43759	Soybean	nucleus	33.2	38.91
KRH13696	Soybean	nucleus	33.1	38.79
KRH13693	Soybean	mitochondrion	30.16	36.03
KRH13692	Soybean	cytosol, mitochondrion	25.81	35.66
KRH43761	Soybean	cytosol, nucleus, plastid	7.19	35.5
KRH40894	Soybean	cytosol	10.12	28.9
KRG94823	Soybean	cytosol	25.51	24.66
KRH75283	Soybean	cytosol, mitochondrion	9.62	21.64
KRH57341	Soybean	nucleus, plastid	16.5	20.9
KRH04069	Soybean	nucleus, plastid	16.5	20.71
KRG88956	Soybean	mitochondrion	14.07	19.94
KRH75282	Soybean	cytosol	3.85	19.49
KRH25682	Soybean	plastid	12.25	18.06
KRH55837	Soybean	plastid	12.15	17.91
KRH33159	Soybean	nucleus	12.04	17.5
KRH53996	Soybean	plasma membrane	12.15	17.47
KRH71976	Soybean	nucleus	11.94	17.46
KRH40434	Soybean	mitochondrion	11.44	16.74
KRH63943	Soybean	plastid	12.45	16.4
KRH63330	Soybean	cytosol, plasma membrane	4.15	15.24
KRH75280	Soybean	mitochondrion	1.82	13.64
KRH00796	Soybean	nucleus	7.39	11.11
KRH63332	Soybean	cytosol	3.04	11.07

Protein Annotations

EntrezGene:100782529	MapMan:16.4.1.4.2	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870
Gene3D:3.40.50.300	Gene3D:3.90.1430.10	EMBL:ACUP02010352	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTUD2_N
InterPro:EFTu-like_2	EnsemblPlantsGene:GLYMA_17G105700	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:I1MTZ8	InterPro:IPR000795	InterPro:IPR014721
EnsemblPlants:KRH03566	ProteinID:KRH03566	ProteinID:KRH03566.1	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679
PFAM:PF03144	PFAM:PF03764	PFAM:PF16004	PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR42908
PANTHER:PTHR42908:SF6	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447
SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231
InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	InterPro:U5-116kDa_C	UniParc:UPI000233DF3A	SEG:seg	:

Description

hypothetical protein

Coordinates

chr17:+:8285849..8291936

Molecular Weight (calculated)

110124.0 Da

IEP (calculated)

4.790

GRAVY (calculated)

-0.271

Length

988 amino acids

Sequence
(BLAST)

001: MDDSLYDEFG NYIGPEIESD QDSDRDSDAD ADDNPDDQSD GGGTAHSDGE GPSNGWMTTI SDELENQVVL AEDKKYYPTA EEVYGEDVET LVMDEDEQPL
101: EQPIIKPVRN IKFEVGVKDS STYVSSQFLL GLMSNPTLVR NVALVGNLQH GKTVFMDMLV EQTHHMSTFD SQSEKHMRYT DTRIDEQERR ISIKAIPMSL
201: VLEDSNSKSY LCNIMDTPGH VNFSDEMTAA LRLADGAVLI VDAAEGVMVN TERAIRHAIQ ERLPIVVVIN KVDRLITELK LPPKDAYHKL RHTLEVINTH
301: ISAASSIAGG VQVVDPVAGN VCFASATAGW SFTLQSFAKL YGKLHGIPLE ANKFASRLWG DYYFHPDTRT FKKKPPASGG ERSFVEFVLE PLYKIYSQVI
401: GEHKKSVETT LAELGVTLSN AAYRLNVRPL LRLACSSVFG PASGFTDMLV QHIPSPRDAA IKKVDHIYTG PKDSSIYKAM AQCDSYGPLM VNVTKLYPKS
501: DCSVFDAFGR VYSGKIQTGQ AVRVLGEGYS PDDEEDMTVK EVTKLWVYQA RDRMPVAEAP PGSWVLIEGV DASIMKTSTL CNVDYDEDVY IFRPLQFNTL
601: SVVKTATEPL NPSELPKMVE GLRKISKSYP LAVTKVEESG EHTILGTGEL YLDSIMKDLR ELYSEVEVKV ADPVVSFCET VVESSSMKCF AETPNKKNKI
701: TMIAEPLERG LAEDIENGVV STDWSKKKLG EFFQTKYDWD LLAARSIWAF GPDKQGPNIL LDDTLPTEVN KDLMNAVKDS IVQGFQWGAR EGPLCDEPIR
801: NVKFKIVDAK IANESLHRGS GQIIPTARRV AYSAFLMATP RLMEPVYYVE IQTPIDCVSA IYTVLSRRRG HVTADVPQPG TPAYIVKAFL PVIESFGFET
901: DLRYHTQGQA FCMSVFDHWA IVPGDPLDKS IVLRPLEPAP IQHLAREFMV KTRRRKGMSE DVSINKFFDE AMMVELAQQA ADLHQQMM

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.