CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71976	Soybean	nucleus	97.06	97.63
VIT_08s0007g08290.t01	Wine grape	plastid	83.24	83.85
Solyc03g058190.2.1	Tomato	plastid	81.18	82.14
Bra008811.1-P	Field mustard	plastid	79.41	80.12
CDY65992	Canola	plastid	79.41	80.12
AT5G13650.2	Thale cress	plastid	79.56	80.03
CDY09816	Canola	plastid	79.41	80.0
CDX91105	Canola	plastid	79.12	79.82
GSMUA_Achr5P14760_001	Banana	plastid	77.06	76.95
CDX85635	Canola	plastid	79.26	76.13
KXG30054	Sorghum	mitochondrion, plastid	74.71	75.71
Os02t0285800-01	Rice	plasma membrane	74.41	75.64
Zm00001d015929_P002	Maize	plastid	74.41	75.41
TraesCS6D01G183500.1	Wheat	plastid	73.82	74.7
TraesCS6A01G192800.1	Wheat	plastid	73.97	74.63
TraesCS6B01G224800.2	Wheat	plastid	73.97	74.52
HORVU6Hr1G050160.1	Barley	plastid	51.03	65.1
KRH25682	Soybean	plastid	37.94	38.51
KRH55837	Soybean	plastid	37.94	38.51
KRH75280	Soybean	mitochondrion	5.29	27.27
KRH40434	Soybean	mitochondrion	23.82	24.0
KRH53996	Soybean	plasma membrane	22.35	22.13
KRH75282	Soybean	cytosol	6.03	21.03
KRH63943	Soybean	plastid	22.21	20.13
KRG88956	Soybean	mitochondrion	19.26	18.79
KRH40894	Soybean	cytosol	9.12	17.92
KRH63330	Soybean	cytosol, plasma membrane	6.62	16.73
KRH43761	Soybean	cytosol, nucleus, plastid	4.71	16.0
KRH63332	Soybean	cytosol	6.32	15.87
KRH13692	Soybean	cytosol, mitochondrion	16.47	15.66
KRH57341	Soybean	nucleus, plastid	17.5	15.26
KRH04069	Soybean	nucleus, plastid	17.5	15.12
KRH00796	Soybean	nucleus	14.26	14.76
KRH43759	Soybean	nucleus	18.09	14.59
KRH13696	Soybean	nucleus	18.09	14.59
KRH13693	Soybean	mitochondrion	16.18	13.3
KRH75283	Soybean	cytosol, mitochondrion	8.53	13.21
KRH20245	Soybean	nucleus	17.5	12.07
KRH03566	Soybean	nucleus	17.5	12.04
KRG94823	Soybean	cytosol	17.5	11.64

Protein Annotations

EntrezGene:100794574	Gene3D:2.40.30.10	Gene3D:2.40.50.250	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
MapMan:35.1	EMBL:ACUP02006383	InterPro:BipA_V	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2
EnsemblPlantsGene:GLYMA_10G103000	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	InterPro:G_TR_CS	UniProt:I1LA71	InterPro:IPR000795	EnsemblPlants:KRH33159
ProteinID:KRH33159	ProteinID:KRH33159.1	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144
PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF4	SMART:SM00838
SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231
TIGRFAMs:TIGR01394	InterPro:Transl_B-barrel_sf	InterPro:TypA_GTP-bd	UniParc:UPI000233C1DE	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:+:21584163..21595392

Molecular Weight (calculated)

75192.4 Da

IEP (calculated)

6.614

GRAVY (calculated)

-0.274

Length

680 amino acids

Sequence
(BLAST)

001: MEKIAALAAN TIHTPLLPNN TTLPKTSSFQ PFFSNQLLGL PLSSSSSSAS SLTAAKRFSC RPIKCSVSEA TEPKTEKKRQ LLRRGDVRNI AIVAHVDHGK
101: TTLVDAMLKQ TKVFRDNQFV QERIMDSNDL ERERGITILS KNTSVTYKDA KINIIDTPGH SDFGGEVERI LNMVEGILLV VDSVEGPMPQ TRFVLKKALE
201: FGHSVVVVVN KIDRPSARPE YVVNSTFELF IELNATDEQC DFQVIYASGI KGQAGLTPEN LAEDLGPLFE SIIRCIPGPR IDKDGALQML VTNIEYDEHK
301: GRIAIGRVQA GVLEKGLDVR VCTSDDSCRY GRVTELYVYD KFNRVPANKV EAGDICAVCG ITDIQIGETI ADKVSGKPLP SIKVEEPTVK MSFSINTSPF
401: VGREGKYVTS RNLRDRLYRE LERNLAMKVE DGETADTFVV SGRGTLHITI LIENMRREGY EFMVGPPKVI NKKVDEKLLE PYEIATVEVP EEHMGAVVEL
501: LGKRRGQMFD MQGVGLEGTT LLKYKIPTRG LLGLRNSILT ASRGTAILNT VFDSYGPWAG EISTRDQGSL VAFEDGTSTS YAISSSQERG QMFIGPGVDV
601: YKGQIVGIHQ RPGDLSLNVC KKKAATNIRS NKEQTVILDT PLDYSLDDCI EYIQEDELVE VTPASIRMSK NPKITNKKTR

Best Arabidopsis Sequence Match ( AT5G13650.1 )
(BLAST)

001: MELSLSTSSA SPAVLRRQAS PLLHKQQVLG VSFASALKPG GGALRFPSRR PLPRPITCSA SPSTAEPASE VKKKQLDRRD NVRNIAIVAH VDHGKTTLVD
101: SMLRQAKVFR DNQVMQERIM DSNDLERERG ITILSKNTSI TYKNTKVNII DTPGHSDFGG EVERVLNMVD GVLLVVDSVE GPMPQTRFVL KKALEFGHAV
201: VVVVNKIDRP SARPEFVVNS TFELFIELNA TDEQCDFQAI YASGIKGKAG LSPDDLAEDL GPLFEAIIRC VPGPNIEKDG ALQMLATNIE YDEHKGRIAI
301: GRLHAGVLRK GMDVRVCTSE DSCRFARVSE LFVYEKFYRV PTDSVEAGDI CAVCGIDNIQ IGETIADKVH GKPLPTIKVE EPTVKMSFSV NTSPFSGREG
401: KYVTSRNLRD RLNRELERNL AMKVEDGETA DTFIVSGRGT LHITILIENM RREGYEFMVG PPKVINKRVN DKLLEPYEIA TVEVPEAHMG PVVELLGKRR
501: GQMFDMQGVG SEGTTFLRYK IPTRGLLGLR NAILTASRGT AILNTVFDSY GPWAGDISTR DLGSLVAFED GTSTSYALAS AQERGQMFVG SGVDVYKGQI
601: VGIHQRPGDL GLNICKKKAA TNIRSNKDVT VILDTPLTYS LDDCIEYIEE DELVEVTPSS IRMCKNQKMA KKGRQ

Arabidopsis Description

Elongation factor family protein [Source:UniProtKB/TrEMBL;Acc:F4K409]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.