Factsheet for Solyc03g058190.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g08290.t01	Wine grape	plastid	83.63	83.26
KRH71976	Soybean	nucleus	82.89	82.4
Bra008811.1-P	Field mustard	plastid	82.59	82.34
CDY09816	Canola	plastid	82.59	82.22
CDY65992	Canola	plastid	82.44	82.2
CDX91105	Canola	plastid	82.29	82.05
AT5G13650.2	Thale cress	plastid	82.29	81.8
KRH33159	Soybean	nucleus	82.14	81.18
CDX85635	Canola	plastid	82.74	78.53
KXG30054	Sorghum	mitochondrion, plastid	76.49	76.6
Zm00001d015929_P002	Maize	plastid	76.34	76.45
Os02t0285800-01	Rice	plasma membrane	76.04	76.38
GSMUA_Achr5P14760_001	Banana	plastid	77.23	76.21
TraesCS6A01G192800.1	Wheat	plastid	74.7	74.48
TraesCS6D01G183500.1	Wheat	plastid	74.4	74.4
TraesCS6B01G224800.2	Wheat	plastid	74.7	74.37
HORVU6Hr1G050160.1	Barley	plastid	52.08	65.67
Solyc07g053470.2.1	Tomato	mitochondrion	37.65	37.99
Solyc03g058880.2.1	Tomato	mitochondrion	23.07	23.48
Solyc04g015450.2.1	Tomato	nucleus	22.92	22.61
Solyc01g090690.2.1	Tomato	plastid	18.75	16.58
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	18.01	15.71
Solyc08g079180.2.1	Tomato	plastid	18.15	15.5
Solyc08g062920.2.1	Tomato	nucleus, plastid	18.9	15.34
Solyc07g007210.2.1	Tomato	nucleus	16.96	12.32
Solyc11g071770.1.1	Tomato	cytosol	17.56	11.52

Protein Annotations

Gene3D:2.40.30.10	Gene3D:2.40.50.250	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300	MapMan:35.1
InterPro:BipA_V	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0000302
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006364	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009628	GO:GO:0009987	GO:GO:0010468	GO:GO:0016787	GO:GO:0031425	GO:GO:0050821
InterPro:G_TR_CS	InterPro:IPR000795	UniProt:K4BGM2	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679
PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF4
SMART:SM00838	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	EnsemblPlantsGene:Solyc03g058190.2
EnsemblPlants:Solyc03g058190.2.1	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR01394	InterPro:Transl_B-barrel_sf	InterPro:TypA_GTP-bd
UniParc:UPI0002768AE4	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:23127951..23142032

Molecular Weight (calculated)

74269.8 Da

IEP (calculated)

6.677

GRAVY (calculated)

-0.204

Length

672 amino acids

Sequence
(BLAST)

001: MEMSMASTTP CFSLPKKTFC ISTPLLKKQL FGTTLPGCLS AKLPLKLNPI HTSIKCAVSE ATQAPSALEK KSQLMRRSDI RNIAIVAHVD HGKTTLVDSM
101: LKQAKVFRDN QFVQERIMDS NDIERERGIT ILSKNTSITY KDTKINIIDT PGHSDFGGEV ERILNMVEGV LLVVDSVEGP MPQTRFVLKK ALEFGHAVVV
201: VVNKIDRPSA RPEFVVNSTF ELFIELNATD EQCDFQVIYA SGIKGKAGLS PENLGEDLGS LFEAVIRCIP GPKINKDGAL QMLATNIEYE EHKGRIAIGR
301: VHAGSLRRGM DVKICTSEDA CRFGRVSELF VYEKFSRVPA ETVEAGDICA VCGIDDIQIG ETIADKSDGK PLPSIKVEEP TVKMSFSVNT SPFVGREGKY
401: VTSRNLRDRL YRELERNLAM KVEDGETADT FIVSGRGTLH ITILIENMRR EGYEFMVGPP KVINKRVNDK LLEPYEIATV EVPEEHMGSV VELLGKRRGQ
501: MFDMQGLGSE GTSFLKYKIP TRGLLGLRNS ILTASRGTAI LNTVFESYES WAGDISTRDL GSLVAFEDGT STSYALMSSQ DRGQLFIGPG VDVYKGQIVG
601: IHQRSGDLAL NVCKKKAATN VRSNKEVTVV LDTPLDFSLD DCIEYIQEDE LVEVTPSSIR MLKNPKSAKK MR

Best Arabidopsis Sequence Match ( AT5G13650.2 )
(BLAST)

001: MELSLSTSSA SPAVLRRQAS PLLHKQQVLG VSFASALKPG GGALRFPSRR PLPRPITCSA SPSTAEPASV EVKKKQLDRR DNVRNIAIVA HVDHGKTTLV
101: DSMLRQAKVF RDNQVMQERI MDSNDLERER GITILSKNTS ITYKNTKVNI IDTPGHSDFG GEVERVLNMV DGVLLVVDSV EGPMPQTRFV LKKALEFGHA
201: VVVVVNKIDR PSARPEFVVN STFELFIELN ATDEQCDFQA IYASGIKGKA GLSPDDLAED LGPLFEAIIR CVPGPNIEKD GALQMLATNI EYDEHKGRIA
301: IGRLHAGVLR KGMDVRVCTS EDSCRFARVS ELFVYEKFYR VPTDSVEAGD ICAVCGIDNI QIGETIADKV HGKPLPTIKV EEPTVKMSFS VNTSPFSGRE
401: GKYVTSRNLR DRLNRELERN LAMKVEDGET ADTFIVSGRG TLHITILIEN MRREGYEFMV GPPKVINKRV NDKLLEPYEI ATVEVPEAHM GPVVELLGKR
501: RGQMFDMQGV GSEGTTFLRY KIPTRGLLGL RNAILTASRG TAILNTVFDS YGPWAGDIST RDLGSLVAFE DGTSTSYALA SAQERGQMFV GSGVDVYKGQ
601: IVGIHQRPGD LGLNICKKKA ATNIRSNKDV TVILDTPLTY SLDDCIEYIE EDELVEVTPS SIRMCKNQKM AKKGRQ

Arabidopsis Description

Elongation factor family protein [Source:UniProtKB/TrEMBL;Acc:F4K409]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.