Factsheet for Zm00001d015929_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30054	Sorghum	mitochondrion, plastid	96.72	96.72
Os02t0285800-01	Rice	plasma membrane	89.72	89.99
TraesCS6D01G183500.1	Wheat	plastid	88.82	88.69
TraesCS6B01G224800.2	Wheat	plastid	89.12	88.59
TraesCS6A01G192800.1	Wheat	plastid	88.97	88.58
HORVU6Hr1G050160.1	Barley	plastid	62.44	78.61
GSMUA_Achr5P14760_001	Banana	plastid	79.28	78.12
VIT_08s0007g08290.t01	Wine grape	plastid	77.35	76.89
Solyc03g058190.2.1	Tomato	plastid	76.45	76.34
AT5G13650.2	Thale cress	plastid	76.45	75.89
Bra008811.1-P	Field mustard	plastid	76.01	75.67
CDY09816	Canola	plastid	76.01	75.56
CDY65992	Canola	plastid	75.86	75.52
KRH71976	Soybean	nucleus	75.56	75.0
CDX91105	Canola	plastid	75.26	74.93
KRH33159	Soybean	nucleus	75.41	74.41
CDX85635	Canola	plastid	75.26	71.33
Zm00001d043494_P005	Maize	mitochondrion	39.2	35.44
Zm00001d000213_P001	Maize	mitochondrion	22.95	22.65
Zm00001d053861_P005	Maize	plastid	22.65	22.62
Zm00001d034826_P001	Maize	mitochondrion, plastid	18.78	16.73
Zm00001d025948_P001	Maize	plastid	17.59	15.36
Zm00001d002822_P001	Maize	plastid	17.59	15.34
Zm00001d034771_P002	Maize	cytosol	18.78	14.95
Zm00001d034773_P001	Maize	cytosol	18.78	14.95
Zm00001d034776_P001	Maize	cytosol	18.78	14.95
Zm00001d012770_P001	Maize	plastid	18.78	14.95
Zm00001d033505_P001	Maize	cytosol	18.33	11.78
Zm00001d046549_P002	Maize	cytosol	16.99	11.64
Zm00001d020342_P001	Maize	mitochondrion	5.22	8.77

Protein Annotations

EntrezGene:100857077	Gene3D:2.40.30.10	Gene3D:2.40.50.250	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
MapMan:35.1	ProteinID:AQK69765.1	InterPro:BipA_V	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2
UniProt:G3K3T1	GO:GO:0000166	GO:GO:0000302	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009987	GO:GO:0010468	GO:GO:0016787	GO:GO:0031425	InterPro:G_TR_CS
InterPro:IPR000795	EMBL:JN107650	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144
PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF4	SMART:SM00838
SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231
TIGRFAMs:TIGR01394	InterPro:Transl_B-barrel_sf	InterPro:TypA_GTP-bd	UniParc:UPI00019D341A	EnsemblPlantsGene:Zm00001d015929	EnsemblPlants:Zm00001d015929_P002
EnsemblPlants:Zm00001d015929_T002	SEG:seg	:	:	:	:

Description

GTP-binding protein TypA

Coordinates

chr5:+:132181261..132195639

Molecular Weight (calculated)

73737.7 Da

IEP (calculated)

7.204

GRAVY (calculated)

-0.261

Length

671 amino acids

Sequence
(BLAST)

001: MQTQTLILRA GPSARRSTPP PASTVHLAAS GRCLLRAPSS LRRRRTRSLR ASASLEQVKE VASSPAPSAG KSSQATRRDV RNIAIVAHVD HGKTTLVDSM
101: LRQAKVFRDN QVVQERIMDS NDLERERGIT ILSKNTSITY KGTKINIIDT PGHSDFGGEV ERVLNMVEGV LLVVDSVEGP MPQTRFVLKK ALEFGHAVVV
201: VVNKIDRPTA RPEFVVNSTF ELFIELNATD EQCDFQTVYA SGIKGKASLS PDNLADDLGP LFEAILRCIP EPRVEKDGAL QMLVSNTEYD EHKGRIAIGR
301: LHAGELQRGM EVKVCTPDDA CRVGKVSELF VYQNFSRAPV ESVSAGDICA VCGIDDIMIG ETIADKVTGT PLPTIKVEEP TVRMSFSINT SPFVGREGKY
401: VTSRNLRDRL YRELERNLAM KVEDGETADT FLVSGRGTLH LTILIENMRR EGYEFMIGPP KVINKTVDGK LLEPYEIAAV EVPEESMGSV VELLGKRRGQ
501: MVDMEANGTE GTTLLKYKIP TRGLIGLRNA ILTASRGRAI LNTIFDSYGP WAGDLSSRDQ GSLVAFEDGS TTSYALLNAQ ERGMLFVQPG QDVYKGQIVG
601: IHQRPGDLAI NVCKKKAATN VRSNKETTVV LDEPLSYSLD DCIEFIQEDE IVEVTPASIR MCKNPKVSKK K

Best Arabidopsis Sequence Match ( AT5G13650.2 )
(BLAST)

001: MELSLSTSSA SPAVLRRQAS PLLHKQQVLG VSFASALKPG GGALRFPSRR PLPRPITCSA SPSTAEPASV EVKKKQLDRR DNVRNIAIVA HVDHGKTTLV
101: DSMLRQAKVF RDNQVMQERI MDSNDLERER GITILSKNTS ITYKNTKVNI IDTPGHSDFG GEVERVLNMV DGVLLVVDSV EGPMPQTRFV LKKALEFGHA
201: VVVVVNKIDR PSARPEFVVN STFELFIELN ATDEQCDFQA IYASGIKGKA GLSPDDLAED LGPLFEAIIR CVPGPNIEKD GALQMLATNI EYDEHKGRIA
301: IGRLHAGVLR KGMDVRVCTS EDSCRFARVS ELFVYEKFYR VPTDSVEAGD ICAVCGIDNI QIGETIADKV HGKPLPTIKV EEPTVKMSFS VNTSPFSGRE
401: GKYVTSRNLR DRLNRELERN LAMKVEDGET ADTFIVSGRG TLHITILIEN MRREGYEFMV GPPKVINKRV NDKLLEPYEI ATVEVPEAHM GPVVELLGKR
501: RGQMFDMQGV GSEGTTFLRY KIPTRGLLGL RNAILTASRG TAILNTVFDS YGPWAGDIST RDLGSLVAFE DGTSTSYALA SAQERGQMFV GSGVDVYKGQ
601: IVGIHQRPGD LGLNICKKKA ATNIRSNKDV TVILDTPLTY SLDDCIEYIE EDELVEVTPS SIRMCKNQKM AKKGRQ

Arabidopsis Description

Elongation factor family protein [Source:UniProtKB/TrEMBL;Acc:F4K409]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.